View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15109_low_7 (Length: 341)
Name: NF15109_low_7
Description: NF15109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15109_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 36876702 - 36876388
Alignment:
| Q |
17 |
atcgtcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36876702 |
atcgtcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactg |
36876603 |
T |
|
| Q |
117 |
gatatcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36876602 |
gatatcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgca |
36876503 |
T |
|
| Q |
217 |
aggttaatttctctggtaatttctacattaatgactcgttgttttatgaactgtgagctttccacgtgctggttagtgagcttttagaaggttaatttct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36876502 |
aggttaatttctctggtaatttctacattaatgactcgttgttttatgaactgtgatctttccacgtgctggttagtgagcttttagaaggttaatttct |
36876403 |
T |
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| Q |
317 |
actttaatctctctg |
331 |
Q |
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||||||||||||||| |
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| T |
36876402 |
actttaatctctctg |
36876388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 33397612 - 33397389
Alignment:
| Q |
21 |
tcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggata |
120 |
Q |
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| T |
33397612 |
tcaaccttgacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaattggata |
33397513 |
T |
|
| Q |
121 |
tcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggt |
220 |
Q |
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| T |
33397512 |
tcagttaccctaaaataatcacc---aat------gacagtgacaattataataatgctttgaagcttctcactcaaaagctttcaaaactccgcaaggt |
33397422 |
T |
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| Q |
221 |
taatttctctggtaatttctacattaatgactc |
253 |
Q |
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|||| |||||||| |||||||| |||||||||| |
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| T |
33397421 |
taatctctctggtcatttctacgttaatgactc |
33397389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 24 - 261
Target Start/End: Original strand, 27004755 - 27004983
Alignment:
| Q |
24 |
accttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggatatca |
123 |
Q |
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| T |
27004755 |
accttgacctctctcacatgttccaatatggcttctctatgccacactcacatatccttgatcgcagattcattccccttcctccaacaattggatatca |
27004854 |
T |
|
| Q |
124 |
gtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaa |
223 |
Q |
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| T |
27004855 |
gtttccctaaaacaatatctggtaatg---------ctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaa |
27004945 |
T |
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| Q |
224 |
tttctctggtaatttctacattaatgactcgttgtttt |
261 |
Q |
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| T |
27004946 |
tctctctggtcattcctactttaatgactctttgtttt |
27004983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 33093052 - 33093119
Alignment:
| Q |
174 |
aatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttcta |
241 |
Q |
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|||||| ||||| ||||| |||||| ||||| |||||| |||||||||||| |||| ||||||||||| |
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| T |
33093052 |
aatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttcta |
33093119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 37579955 - 37580005
Alignment:
| Q |
174 |
aatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaat |
224 |
Q |
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|||||||||||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
37579955 |
aatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaat |
37580005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 33708171 - 33708234
Alignment:
| Q |
198 |
aggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgtttt |
261 |
Q |
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|||||||||||||| || ||||||||| |||| ||||||| |||| | |||||||| ||||||| |
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| T |
33708171 |
aggctttcaaaactccgtaaggttaatctctccggtaattcctacgtaaatgactcattgtttt |
33708234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 33714038 - 33714100
Alignment:
| Q |
199 |
ggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgtttt |
261 |
Q |
| |
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|||||||| |||| || ||||||||| |||||||||||| ||| | |||||||||||||||| |
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| T |
33714038 |
ggctttcagaactccgtaaggttaatctctctggtaattcctatgtaaatgactcgttgtttt |
33714100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 18723544 - 18723634
Alignment:
| Q |
181 |
taaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgttttatgaactgtg |
271 |
Q |
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||||| ||||||||||||||||||||||||| ||||| |||||| | ||||||||| ||||||||||||| || ||||||| | ||||||| |
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| T |
18723544 |
taaaggttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgattcattgttttttcaactgtg |
18723634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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