View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_high_10 (Length: 407)
Name: NF1510_high_10
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 6323737 - 6324113
Alignment:
| Q |
17 |
gtagatattcttaaactaagcctttctctcacgatcccatatattttccaggtcacgtcctacgagatatgtttgattccatttttatatctgcatgtgg |
116 |
Q |
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| T |
6323737 |
gtagatattcttaaactaagcctttctctcacgatcccatatattttccaggtcacgtcctacgatatatgtttgattccatttttatatctgcatgtgg |
6323836 |
T |
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| Q |
117 |
taaaaataaactatgaagttgcttcgtcattttcccccacaaattatacactaatgtttctgtattttaaaataaatagactaccnnnnnnnnngttaga |
216 |
Q |
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| T |
6323837 |
taaaaataaactatgaagttgcttcgtcattttcccccacaaattatacactaatgtttctgtattttataataaatagactaccaaaaaaaaagttaga |
6323936 |
T |
|
| Q |
217 |
atattaacaataaaaattatatagtattgcccttcaactcataatgtaaactaggattgcgagatgaaatgctaattggaatgttacaattaccattgag |
316 |
Q |
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| T |
6323937 |
atattaacaataaaaattatatagtattgcccttcaactcataatgtaaactaggattgcgagatgaaatgctaattggaatgttacaattacca----- |
6324031 |
T |
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| Q |
317 |
atttgagaatgaaatatgaaactttttgagttaaggcgagaacaaaagttgtatagtattgccattaccgacaattaccctttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324032 |
--ttgagaatgaaatatgaaactttttgagttaaggcgagaacaaaagttgtatagtattgccattaccgacaattaccctttg |
6324113 |
T |
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