View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_high_11 (Length: 406)
Name: NF1510_high_11
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 49432927 - 49433308
Alignment:
| Q |
17 |
tttctcttgttcagtaagtgcatgacggaaatggcatctatggccataagggcacacaaccccagcaaggaccatcctgcagacctcagttttgtagcgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49432927 |
tttctcttgttcagtaagtgcatgacggaaatggcatctatggccataagggcacacaaccccagcaaggaccatcctgcagacctcagttttgtagcgt |
49433026 |
T |
|
| Q |
117 |
gggtggcggatcactgggcgaagctccccaatgccatgagcgaattgacagtggtctccataagggcatgtgccagtttcctgccatttgttacagagct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49433027 |
gggtggcggatcactgggcgaagctccccaatgccatgagcgaattgacagtggtctccataagggcatgtgccagtttcctgccatttgttacagagct |
49433126 |
T |
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| Q |
217 |
cagtcttgaacatcccctggttgtacacaaccatctcaagaggctcttcctctttctgccctcctcgcacaaataccttttgctgcaagcatagtaacac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49433127 |
cagtcttgaacatcccctggttgtacacaaccatctcaagaggctcttcctctttctgccctcctcgcacaaataccttttgctgcaagcatagtaacac |
49433226 |
T |
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| Q |
317 |
aaaatttcaacaataatcaattcttccgaatatcaacaatcaaatctatataatgtccactcattgttattaaatgatgatg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49433227 |
aaaatttcaacaataatcaattcttccgaatatcaacaatcaaatctatataatgtccactcattgttattaaatggtgatg |
49433308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 39170721 - 39170897
Alignment:
| Q |
17 |
tttctcttgttcagtaagtgcatgacggaaatggcatctatggccataagggcacacaaccccagcaaggaccatcctgcagacctcagttttgtagcgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170721 |
tttctcttgttcagtaagtgcatgacggaaatggcatctatggccacacgggcacacaaccccagcaaggaccatcctgcagacctcagttttgtagcgt |
39170820 |
T |
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| Q |
117 |
gggtggcggatcactgggcgaagctccccaatgccatgagcgaattgacagtggtctccataagggcatgtgccagt |
193 |
Q |
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|| |||||||||| | |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39170821 |
ggatggcggatcatttggcgaagctctccaatgccgtgagcaaattgacagtggtctccataagggcatgtgccagt |
39170897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 39170894 - 39170934
Alignment:
| Q |
217 |
cagtcttgaacatcccctggttgtacac-aaccatctcaag |
256 |
Q |
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| T |
39170894 |
cagtcttgaacatcccctggttgtacacaaaccatctcaag |
39170934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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