View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_high_14 (Length: 377)
Name: NF1510_high_14
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 8293547 - 8293895
Alignment:
| Q |
16 |
gaacctgtggagctgcttacaattgattgaaactggtaaatcttatgtgtccatttattttt-ctcttctcttccgtgttaatttctctgattccagata |
114 |
Q |
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| T |
8293547 |
gaacctgtggagctgcttacaattgactgaaactggtaaatcttatgtgtccatttattttttctcttctcttccgtgttaatttctctgattccagata |
8293646 |
T |
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| Q |
115 |
ttttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtttaggtgctannnnnnnaataacaaat |
214 |
Q |
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| T |
8293647 |
ttttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtttaggtgctatttttttaataacaaat |
8293746 |
T |
|
| Q |
215 |
gtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctgcaatgtacacgtttctgttgttttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293747 |
gtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctgcaatgtacacgtttctgttgttttt |
8293846 |
T |
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| Q |
315 |
atatagttatgagttactgctattagttttatgtgtgtaatatgaatat |
363 |
Q |
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| T |
8293847 |
atatagttatgagttactgctattagttttatgtgtgtaatatgaatat |
8293895 |
T |
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