View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_high_18 (Length: 353)
Name: NF1510_high_18
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 9679427 - 9679763
Alignment:
| Q |
1 |
aaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaagatccgaaaaacaaactttcttcttggaatgaagatgattata |
100 |
Q |
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| T |
9679427 |
aaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaagatccgaaaaacaaactttcttcttggaatgaagatgattata |
9679526 |
T |
|
| Q |
101 |
gtccttgcaattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctcttgttcttgatggattctctctttcaggacatatcggtaaaag |
200 |
Q |
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| T |
9679527 |
gtccttgcaattgggaaggtgttaaatgtgatccttcaacaaatagggtatcttctcttgttcttgatggattctctctttcaggacatattggtaaaag |
9679626 |
T |
|
| Q |
201 |
ccttatgaaattgcagttccttcaaattctttcactttctcggaacaacttcacggggagaataaaccatgatcttcttattacactttggaatctaaaa |
300 |
Q |
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| T |
9679627 |
ccttatgagattacagttccttcaaattctttcactttctcggaacaacttcacggggagaataaaccatgatcttcttattacactttggaatctaaaa |
9679726 |
T |
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| Q |
301 |
gttgttgatttgagtgaaaacaatctcgttggaacaa |
337 |
Q |
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| T |
9679727 |
gttgttgatttgagtgaaaacaatctcgttggaacaa |
9679763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 27380394 - 27380149
Alignment:
| Q |
9 |
tttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaagatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgc |
108 |
Q |
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| T |
27380394 |
tttcaatgatgatatattaggcttaattgtgtttaaagctggtttacaagatcctaaacacaaactcatttcatggaatgaagatgattacactccttgt |
27380295 |
T |
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| Q |
109 |
aattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctcttgttcttgatggattctctctttcaggacatatcggtaaaagccttatga |
208 |
Q |
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|||||||||||||| ||||||||| |||||| ||||| || ||||| || | ||||||||||||||||||||||| || || | || | || | ||| |
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| T |
27380294 |
aattgggaaggtgtgaaatgtgattcttcaaacaatagagtcacttctgttatacttgatggattctctctttcaggtcacattgatagaggcttattga |
27380195 |
T |
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| Q |
209 |
aattgcagttccttcaaattctttcactttctcggaacaacttcac |
254 |
Q |
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| T |
27380194 |
gattgcagtttcttcaaactctatcactttctggtaacaatttcac |
27380149 |
T |
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