View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_high_23 (Length: 305)
Name: NF1510_high_23
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 39672669 - 39672382
Alignment:
| Q |
1 |
aactaaaaagaagcaaaatggataattagtaaattagacttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaaga |
100 |
Q |
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| T |
39672669 |
aactaaaaagaagcaaaatggataattagtaaattagacttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaaga |
39672570 |
T |
|
| Q |
101 |
atcctaatagcaatagcactaccaataacctcttgtatgtcagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672569 |
atcctaatagcaatagcactaccaataacctcttgtatgtcagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggat |
39672470 |
T |
|
| Q |
201 |
actcctccctacaaagctcagccaaatgcttccctgtagccacaccaagccttgctgacaaaagctgaatcaaaagccccatagctgt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
39672469 |
actcctccctacaaagctcagccaaatgcttccctgtagccacaccaagcctagctgacaaaagctgaatcaaaagtcccatagctgt |
39672382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 40 - 285
Target Start/End: Original strand, 5805221 - 5805466
Alignment:
| Q |
40 |
ttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtatg |
139 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||| |||||||||||||||||||| || |
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| T |
5805221 |
ttaccaatctaaagcagtaatgacaacaccagcccaaagaggaacaaggccattactcaaaatcctaatagcaatggcactaccaataacctcttgaata |
5805320 |
T |
|
| Q |
140 |
tcagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggatactcctccctacaaagctcagccaaatg-cttccctgta |
238 |
Q |
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| T |
5805321 |
tcagaaccaattaaagcaacttcagtcatcaaccaaagaacaatcctagcccaagtaggatactcatctctacaaagttcagccaaatgtcttccc-gta |
5805419 |
T |
|
| Q |
239 |
gccacaccaagccttgctgacaaaagctgaatcaaaagccccatagc |
285 |
Q |
| |
|
|| ||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
5805420 |
gcaacacctaaccttgctgacaaaagctgaatcaaaagccccatagc |
5805466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 47290471 - 47290290
Alignment:
| Q |
41 |
taccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtatgt |
140 |
Q |
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||||||||| ||||||||| | |||||||||||||||||| | ||| ||| |||||||||| |||||||||||||||||||||||||||||| || | |
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| T |
47290471 |
taccaatcagaagcagtaataagaacaccagcccaaagaggcaaaacaccacgactaagaatctgaatagcaatagcactaccaataacctcttgaatat |
47290372 |
T |
|
| Q |
141 |
cagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggatactcctccctacaaagctcagc |
222 |
Q |
| |
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||| |||||| | ||||| |||||||||| |||||||||||| || ||||| | ||||||||||| ||||||||||||| |
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| T |
47290371 |
cagcaccaatcaaagcaagttcagccataaaccaaagcacatatctcgcccaattcggatactcctctttacaaagctcagc |
47290290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 10388442 - 10388316
Alignment:
| Q |
39 |
cttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtat |
138 |
Q |
| |
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|||||||||||| || || || | |||||||||||||| |||| || ||||| ||||||||| ||| ||||||||||||||||||||||||||| || |
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| T |
10388442 |
cttaccaatcaaaggctgtgataataacaccagcccaaatgggaagaagtccatggctaagaatcttaagagcaatagcactaccaataacctcttgaat |
10388343 |
T |
|
| Q |
139 |
gtcagaaccaataagagcaaactcagc |
165 |
Q |
| |
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|||| | |||| | ||| |||||||| |
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| T |
10388342 |
atcagcagcaatcaaagccaactcagc |
10388316 |
T |
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