View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1510_high_24 (Length: 304)

Name: NF1510_high_24
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1510_high_24
NF1510_high_24
[»] chr4 (13 HSPs)
chr4 (182-262)||(21555383-21555463)
chr4 (182-272)||(12701031-12701121)
chr4 (182-271)||(35929701-35929790)
chr4 (182-262)||(56100144-56100224)
chr4 (182-271)||(23249464-23249553)
chr4 (182-262)||(36609419-36609500)
chr4 (182-262)||(35749388-35749468)
chr4 (186-274)||(44243706-44243794)
chr4 (182-252)||(827842-827912)
chr4 (182-270)||(19598362-19598450)
chr4 (182-239)||(27733402-27733459)
chr4 (182-262)||(41842791-41842870)
chr4 (212-262)||(53584602-53584652)
[»] chr8 (17 HSPs)
chr8 (182-273)||(23403590-23403681)
chr8 (182-272)||(4623856-4623946)
chr8 (182-272)||(30204654-30204744)
chr8 (182-262)||(36470141-36470222)
chr8 (182-262)||(14842311-14842391)
chr8 (182-262)||(39436844-39436924)
chr8 (193-272)||(22798534-22798613)
chr8 (182-272)||(29958520-29958610)
chr8 (182-262)||(16655981-16656061)
chr8 (182-272)||(37629995-37630085)
chr8 (182-262)||(3001383-3001463)
chr8 (182-258)||(4234185-4234261)
chr8 (182-258)||(41787503-41787579)
chr8 (182-268)||(21567704-21567790)
chr8 (182-262)||(36046535-36046614)
chr8 (182-273)||(23275533-23275624)
chr8 (197-262)||(45310036-45310101)
[»] chr6 (10 HSPs)
chr6 (184-287)||(2993592-2993689)
chr6 (182-262)||(6200168-6200248)
chr6 (182-262)||(2814896-2814976)
chr6 (182-267)||(23774067-23774152)
chr6 (182-258)||(444528-444604)
chr6 (196-262)||(1067803-1067869)
chr6 (182-262)||(26393995-26394075)
chr6 (182-262)||(24640358-24640438)
chr6 (13-59)||(2993419-2993467)
chr6 (182-239)||(34710137-34710194)
[»] chr5 (18 HSPs)
chr5 (182-270)||(8159076-8159164)
chr5 (182-272)||(34766890-34766980)
chr5 (182-272)||(3729339-3729429)
chr5 (182-262)||(21020686-21020766)
chr5 (182-262)||(39508322-39508402)
chr5 (182-262)||(20736164-20736244)
chr5 (182-262)||(41929344-41929424)
chr5 (182-261)||(21583853-21583932)
chr5 (182-262)||(9913805-9913885)
chr5 (182-262)||(9793641-9793721)
chr5 (195-262)||(2068966-2069031)
chr5 (185-262)||(3711185-3711266)
chr5 (182-262)||(9793738-9793818)
chr5 (181-265)||(20815670-20815754)
chr5 (195-262)||(25081770-25081837)
chr5 (195-262)||(25139739-25139806)
chr5 (182-218)||(38451045-38451081)
chr5 (182-240)||(41910224-41910282)
[»] chr3 (15 HSPs)
chr3 (182-262)||(39391960-39392040)
chr3 (182-272)||(45602977-45603067)
chr3 (182-271)||(36404228-36404317)
chr3 (182-262)||(29360485-29360565)
chr3 (182-258)||(35534489-35534565)
chr3 (182-262)||(37115893-37115973)
chr3 (182-262)||(46487273-46487352)
chr3 (182-252)||(16353495-16353565)
chr3 (182-251)||(3618346-3618415)
chr3 (182-273)||(14201709-14201798)
chr3 (182-273)||(52742344-52742435)
chr3 (182-248)||(48644538-48644604)
chr3 (182-249)||(54882998-54883065)
chr3 (182-268)||(48944111-48944197)
chr3 (182-219)||(47599410-47599447)
[»] chr2 (20 HSPs)
chr2 (182-262)||(27004452-27004532)
chr2 (182-262)||(6974523-6974603)
chr2 (182-274)||(37060085-37060177)
chr2 (182-259)||(4382213-4382290)
chr2 (182-274)||(13274192-13274283)
chr2 (182-262)||(21423368-21423448)
chr2 (182-262)||(28107494-28107574)
chr2 (182-262)||(5958969-5959049)
chr2 (182-262)||(24475938-24476018)
chr2 (182-262)||(30609692-30609772)
chr2 (182-262)||(37802842-37802922)
chr2 (182-261)||(15070396-15070475)
chr2 (182-262)||(30393598-30393678)
chr2 (182-272)||(10217361-10217451)
chr2 (201-271)||(37140159-37140229)
chr2 (182-262)||(5807326-5807405)
chr2 (182-235)||(14786264-14786317)
chr2 (186-239)||(27969513-27969566)
chr2 (182-219)||(30757190-30757227)
chr2 (182-259)||(43022888-43022964)
[»] scaffold0306 (1 HSPs)
scaffold0306 (182-262)||(13062-13142)
[»] scaffold0152 (1 HSPs)
scaffold0152 (182-262)||(22185-22265)
[»] chr7 (7 HSPs)
chr7 (182-270)||(8163649-8163737)
chr7 (182-262)||(41326044-41326124)
chr7 (182-274)||(40337072-40337164)
chr7 (182-270)||(2362388-2362476)
chr7 (182-262)||(35589413-35589493)
chr7 (182-262)||(28089136-28089217)
chr7 (182-231)||(31637748-31637797)
[»] chr1 (14 HSPs)
chr1 (182-262)||(794916-794996)
chr1 (182-262)||(18808781-18808861)
chr1 (182-272)||(41998885-41998975)
chr1 (182-262)||(571650-571730)
chr1 (186-262)||(26653950-26654026)
chr1 (182-272)||(24909514-24909604)
chr1 (187-272)||(1585853-1585938)
chr1 (182-262)||(39001950-39002030)
chr1 (182-257)||(11121865-11121940)
chr1 (199-258)||(4792591-4792650)
chr1 (182-262)||(3695409-3695489)
chr1 (182-238)||(7409829-7409885)
chr1 (182-244)||(36290612-36290674)
chr1 (182-262)||(44272363-44272444)
[»] scaffold0025 (1 HSPs)
scaffold0025 (182-262)||(67875-67955)
[»] scaffold0302 (1 HSPs)
scaffold0302 (182-273)||(18509-18600)
[»] scaffold0140 (1 HSPs)
scaffold0140 (182-262)||(21479-21559)
[»] scaffold0121 (1 HSPs)
scaffold0121 (182-265)||(37409-37492)
[»] scaffold0532 (1 HSPs)
scaffold0532 (182-262)||(11322-11402)
[»] scaffold1248 (1 HSPs)
scaffold1248 (182-262)||(971-1051)
[»] scaffold0952 (1 HSPs)
scaffold0952 (182-262)||(1262-1342)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 21555463 - 21555383
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||    
T  21555463 aaactaaaacatgtaaaaggataactattgtgagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaa 21555383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 12701121 - 12701031
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||  ||||||||    
T  12701121 aaactaaaacatgtaaaagaataactattgtaagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaccgactctaa 12701031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 35929790 - 35929701
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactcta 271  Q
    ||||||||| || ||||| |||||||||||||||||||  |||||||||||||||||| |||||||||||| ||||||||| || |||||    
T  35929790 aaactaaaacatataaaatgataactattgtgagaagaggacttatatatttcaaaaactgaaaacaaaaactatttcaaacaggctcta 35929701  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 56100144 - 56100224
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||||||||||||||| |||||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  56100144 aaactaaaacatgtaaaaggataactattgcgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 56100224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 23249553 - 23249464
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactcta 271  Q
    ||||||||| ||||||||||||||||||||||||||||   ||| |||||||||||||  ||||||||||||| ||||||| || |||||    
T  23249553 aaactaaaacatgtaaaaggataactattgtgagaagagggcttgtatatttcaaaaaccgaaaacaaaaattgtttcaaacaggctcta 23249464  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 36609419 - 36609500
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattg-aaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||||  | || ||||||||||||| || |||||||||| |||||||||    
T  36609419 aaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaaacaaaaactatttcaaa 36609500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 35749468 - 35749388
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || ||||| ||||| |||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||    
T  35749468 aaactaaaacatataaaaagataattattatgagaagatgacttgtatatttcaaaaattgaaaataaaaattatttcaaa 35749388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 44243706 - 44243794
Alignment:
Q  186 taaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaagt 274  Q
    ||||| || |||||||||||||||||| ||||||  |||| ||||||||||||| | ||||||||| |||||||||| || ||||||||    
T  44243706 taaaacatataaaaggataactattgtaagaagatgacttgtatatttcaaaaactaaaaacaaaatttatttcaaacaggctctaagt 44243794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 827912 - 827842
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaa 252  Q
    ||||||||| |||||||| |||||||||||||||||||  |||| |||||||||||||  |||||||||||    
T  827912 aaactaaaacatgtaaaaagataactattgtgagaagaggacttgtatatttcaaaaaccgaaaacaaaaa 827842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 19598450 - 19598362
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactct 270  Q
    ||||||||| |||||||| || ||||||| |||||| |  |||| |||||||| |||| |||||||||||| ||||||||| |||||||    
T  19598450 aaactaaaacatgtaaaaagaaaactattttgagaaaatgacttgtatatttcgaaaactgaaaacaaaaactatttcaaacagactct 19598362  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 27733459 - 27733402
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaa 239  Q
    ||||||||| ||||||||||||||||||||||||||||   ||| |||||||||||||    
T  27733459 aaactaaaacatgtaaaaggataactattgtgagaagaggtcttgtatatttcaaaaa 27733402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 41842870 - 41842791
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||| ||||| |||||||||| |  | || |||||||||||||  ||||||||||| |||||||||    
T  41842870 aaactaaaacatgtaaaag-ataacaattgtgagaaaaggatttgtatatttcaaaaaccgaaaacaaaaactatttcaaa 41842791  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 53584602 - 53584652
Alignment:
Q  212 tgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  53584602 tgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 53584652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 23403681 - 23403590
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaag 273  Q
    ||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||| |||||||||||| |||||||    
T  23403681 aaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaataggctctaag 23403590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 4623856 - 4623946
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||| ||||||||| || ||||||    
T  4623856 aaactaaaacatgtaaaaggataactattgtgagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaacagtctctaa 4623946  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 30204654 - 30204744
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||| ||||||||| || ||||||    
T  30204654 aaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctctaa 30204744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 36470141 - 36470222
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattg-aaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||| || ||||||||||||||||||||    
T  36470141 aaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactgaaaaacaaaaattatttcaaa 36470222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 14842391 - 14842311
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||||||| ||||  |||| ||||||||||||| ||||||||||||||||||||||    
T  14842391 aaactaaaatatgtaaaatgataactattgtgaaaagaggacttgtatatttcaaaaactgaaaacaaaaattatttcaaa 14842311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 39436924 - 39436844
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || |||||  ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  39436924 aaactaaaacatataaaaaaataactattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaattatttcaaa 39436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 22798613 - 22798534
Alignment:
Q  193 tgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||| ||||||||| || ||||||    
T  22798613 tgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctctaa 22798534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 29958520 - 29958610
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| ||||||||||||||||||||| | ||||  |||| ||||||||||||| |||||||||||||||||| ||| || ||||||    
T  29958520 aaactaaaacatgtaaaaggataactattgtaataagatgacttgtatatttcaaaaactgaaaacaaaaattattttaaagaggctctaa 29958610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 16656061 - 16655981
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| ||||||||||||||||||||  ||| ||||||| ||||| |||||||||||| |||||||||    
T  16656061 aaactaaaacatgtaaaatgataactattgtgagaagaaggcttgtatattttaaaaactgaaaacaaaaactatttcaaa 16655981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 37630085 - 37629995
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| |||||||||| ||||||||| |||||||   ||||||||||| ||||| |||||||||||| ||||||||| || ||||||    
T  37630085 aaactaaaacatgtaaaaggctaactattgcgagaagagggcttatatatttaaaaaactgaaaacaaaaactatttcaaacaggctctaa 37629995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 3001383 - 3001463
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||| ||||||||||||  |||| ||||||||||||| |||||| ||||| |||||||||    
T  3001383 aaactaaaacatgtaaaaagataaccattgtgagaagaggacttgtatatttcaaaaactgaaaataaaaactatttcaaa 3001463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 4234261 - 4234185
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattattt 258  Q
    ||||||||| |||||||||| ||||||||| |||||||  |||| ||||||||||||| |||||||||||| |||||    
T  4234261 aaactaaaacatgtaaaaggctaactattgcgagaagatgacttgtatatttcaaaaactgaaaacaaaaactattt 4234185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 41787579 - 41787503
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattattt 258  Q
    ||||||||| |||||||| |||||||||||| |||||| || |||||||||| ||||| |||||||||||| |||||    
T  41787579 aaactaaaacatgtaaaaagataactattgtaagaagagaatttatatattttaaaaactgaaaacaaaaactattt 41787503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 21567790 - 21567704
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagact 268  Q
    ||||||||| |||||||| |||||||||||| ||||||  | || |||||||| |||| |||||||||||| ||||||||| |||||    
T  21567790 aaactaaaacatgtaaaaagataactattgtaagaagaggatttgtatatttctaaaactgaaaacaaaaactatttcaaacagact 21567704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 36046535 - 36046614
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||| ||| | | || ||||||||||||| || ||||||||| |||||||||    
T  36046535 aaactaaaacatgtaaaaggataactattgtgaaaaggagatttgtatatttcaaaaactg-aaacaaaaactatttcaaa 36046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 23275533 - 23275624
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaag 273  Q
    ||||||||| ||||||||| |||||||  || | ||||  |||| ||||||||||||| |||||||||||| ||||||||| || |||||||    
T  23275533 aaactaaaacatgtaaaagaataactaccgtaaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctctaag 23275624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 45310036 - 45310101
Alignment:
Q  197 aaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    |||| ||||| ||| ||| |||| ||||| |||||||||||||||||||||||||| |||||||||    
T  45310036 aaagaataaccattatgaaaagagaacttgtatatttcaaaaattgaaaacaaaaactatttcaaa 45310101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 2993592 - 2993689
Alignment:
Q  184 actaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaagtatatgcatt 283  Q
    |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |      ||||||| ||||||||||||||||||||||||||||    
T  2993592 actaaaagatataaaaggataactattgtgagaagagaacttgtatatttcaaaaact------aaaaattctttcaaatagactctaagtatatgcatt 2993685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 6200168 - 6200248
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||||||||||||||||||||||| || || ||||||||||||| |||||||||||| |||||||||    
T  6200168 aaactaaaatatgtaaaaggataactattgtgagaagagaatttgtatatttcaaaaactgaaaacaaaaaatatttcaaa 6200248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 2814896 - 2814976
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||||||||||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  2814896 aaactaaaacatgtaaaatgataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 2814976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 23774152 - 23774067
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagac 267  Q
    ||||||||| || |||||||||||||||| |||||||| ||||| ||||||||||||||| |||| ||||| ||||||||| ||||    
T  23774152 aaactaaaacatataaaaggataactattatgagaagagaacttgtatatttcaaaaattaaaaataaaaactatttcaaacagac 23774067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 444604 - 444528
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattattt 258  Q
    ||||||||| |||||| |||||||||||||||||||||  |||| ||||||||||||| |||||||||||| |||||    
T  444604 aaactaaaacatgtaataggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactattt 444528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 1067869 - 1067803
Alignment:
Q  196 aaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||    
T  1067869 aaaagggtaactattgtgagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 1067803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 26393995 - 26394075
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| ||||| ||||| |||||||| | || ||||||||||||| |||||||||||| |||||||||    
T  26393995 aaactaaaacatgtaaaatgataaatattgcgagaagaagatttttatatttcaaaaactgaaaacaaaaactatttcaaa 26394075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 24640358 - 24640438
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || || ||||||||||||| ||||||||  ||||  |||||||||||| |||||||||||| |||||||||    
T  24640358 aaactaaaacatatagaaggataactattatgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 24640438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 2993419 - 2993467
Alignment:
Q  13 cataggtgaattaaatcttcattcaaa--atcataagagattagagcct 59  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  2993419 cataggtgaattaaatcttcattcaaattatcataagagattagagcct 2993467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 34710194 - 34710137
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaa 239  Q
    ||||||||| || |||||| ||||||| |||||||||| ||||| |||||||||||||    
T  34710194 aaactaaaacatataaaagaataactactgtgagaagagaacttgtatatttcaaaaa 34710137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 8159076 - 8159164
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactct 270  Q
    ||||||||| |||||||||||||| |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||| |||||||    
T  8159076 aaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacagactct 8159164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 34766890 - 34766980
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| ||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||| ||||||||| || ||||||    
T  34766890 aaactaaaacatgtaaaagaataactattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacaggctctaa 34766980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 3729339 - 3729429
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| |||||||||||||| |||||||||||||  |||| ||||||||||||| |||||||||||| ||||||||| || ||||||    
T  3729339 aaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctctaa 3729429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 21020766 - 21020686
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||  || ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |||||||||    
T  21020766 aaactaaatcatataaaaggataactattgcgagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaa 21020686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 39508322 - 39508402
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||| |||||||||||||||| || |||| ||||||||||||| |||||||||||| |||||||||    
T  39508322 aaactaaaacatgtaaaagaataactattgtgagaaaaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 39508402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 20736164 - 20736244
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||||||| | ||  |||||||| |||||||||||||||||||||| |||||||||    
T  20736164 aaactaaaacatgtaaaatgataactattgtgaaaggaggacttatatttttcaaaaattgaaaacaaaaactatttcaaa 20736244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 41929424 - 41929344
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||||||||||||||| || |||| |||||  |||||||||||| |||||||||||| |||||||||    
T  41929424 aaactaaaacatgtaaaaggataactattgcgaaaagagaacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 41929344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 21583932 - 21583853
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaa 261  Q
    ||||||||| |||||||| |||||||||| ||||||||  |||| ||||||||||||| |||||||||||| ||||||||    
T  21583932 aaactaaaacatgtaaaaagataactattatgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaa 21583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 9913885 - 9913805
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||| ||||| || ||||| ||||||||||||| | |||||||||| |||||||||    
T  9913885 aaactaaaacatgtaaaaagataactattatgagatgagaacttgtatatttcaaaaactaaaaacaaaaactatttcaaa 9913805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 9793641 - 9793721
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||| | |||   | || ||||||||||||| |||||||||||| |||||||||    
T  9793641 aaactaaaacatgtaaaaggataactattgtaaaaaggggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 9793721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 2069031 - 2068966
Alignment:
Q  195 taaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||| ||||| |||||||||||||| ||||||||  |||||||| |||||||||||| |||||||||    
T  2069031 taaaaagataaatattgtgagaagaagacttatat--ttcaaaaactgaaaacaaaaactatttcaaa 2068966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 3711266 - 3711185
Alignment:
Q  185 ctaaaagatgtaaaaggataactattgtgagaagaaaactt----atatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    |||||| |||||||| |||||||||||||| || | |||||    |||||||||||||| |||||||||||| |||||||||    
T  3711266 ctaaaacatgtaaaaagataactattgtgaaaatagaacttgtatatatatttcaaaaactgaaaacaaaaactatttcaaa 3711185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 9793738 - 9793818
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| | ||||||||||||||||||| | |||   | || ||||||||||||| |||||||||||| |||||||||    
T  9793738 aaactaaaacaagtaaaaggataactattgtaaaaaggggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 9793818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 20815754 - 20815670
Alignment:
Q  181 gaaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatag 265  Q
    ||||| |||| || ||||| ||||||||||||||||| |  |||| ||||||| ||||| |||||||||||| ||||| ||||||    
T  20815754 gaaacaaaaacatataaaatgataactattgtgagaaaaggacttgtatattttaaaaactgaaaacaaaaactattttaaatag 20815670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 25081837 - 25081770
Alignment:
Q  195 taaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||| |||||||||||||||||||   ||| ||||||||||||  |||||||||||| |||||||||    
T  25081837 taaaatgataactattgtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaa 25081770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 25139806 - 25139739
Alignment:
Q  195 taaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||| |||||||||||||||||||   ||| ||||||||||||  |||||||||||| |||||||||    
T  25139806 taaaatgataactattgtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaa 25139739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 38451045 - 38451081
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaag 218  Q
    ||||||||| |||||||||||||||||||||||||||    
T  38451045 aaactaaaacatgtaaaaggataactattgtgagaag 38451081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 41910224 - 41910282
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaat 240  Q
    ||||||||| |||||||| |||||||||||||| ||||  |||| ||||||| ||||||    
T  41910224 aaactaaaacatgtaaaatgataactattgtgaaaagaggacttgtatattttaaaaat 41910282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 39392040 - 39391960
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||    
T  39392040 aaactaaaacatgtaaaaggataactattgtgaaaagaaaacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 39391960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 45603067 - 45602977
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| ||||||||||||||||||||||| ||||  |||| ||||||||||||| |||||||||||| ||||||||| |||||||||    
T  45603067 aaactaaaacatgtaaaaggataactattgtgataagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagactctaa 45602977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 36404228 - 36404317
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactcta 271  Q
    ||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||| ||||||||| || |||||    
T  36404228 aaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctcta 36404317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 29360565 - 29360485
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||| ||||||||||  |||| ||||||||||||| |||||| ||||||| |||||||    
T  29360565 aaactaaaacatgtaaaaggataactactgtgagaagaggacttgtatatttcaaaaactgaaaagaaaaattgtttcaaa 29360485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 35534565 - 35534489
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattattt 258  Q
    ||||||||| || ||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||    
T  35534565 aaactaaaacatataaaatgataactattgtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactattt 35534489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 37115893 - 37115973
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || ||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||||| |||||||||    
T  37115893 aaactaaaacatataaaatgataactattgcgagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaa 37115973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 46487352 - 46487273
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||    
T  46487352 aaactaaaacatataaaatgataactattgtgagaagaagacttatatatttcaaaaactgaaaa-aaaaactatttcaaa 46487273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 16353495 - 16353565
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaa 252  Q
    ||||||||| ||||||||||||||||||||||| ||||  |||| ||||||||||||| ||||||||||||    
T  16353495 aaactaaaacatgtaaaaggataactattgtgaaaagaggacttgtatatttcaaaaactgaaaacaaaaa 16353565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 3618346 - 3618415
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaa 251  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||| |||||||||||    
T  3618346 aaactaaaacatgtaaaaagataaatattgtgagaagaaaacttgtatatttcagaaactgaaaacaaaa 3618415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 14201798 - 14201709
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaag 273  Q
    ||||||||| ||||||||| ||||||||||||| ||||  ||||||||  |||||||| |||||||||||| ||||||||| || |||||||    
T  14201798 aaactaaaacatgtaaaagaataactattgtgaaaagaggacttatat--ttcaaaaactgaaaacaaaaactatttcaaacaggctctaag 14201709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 52742435 - 52742344
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaag 273  Q
    ||||||||| |||||||| ||||||||||| || |||| || || ||||||||||||| || ||||||||| ||||||||| || |||||||    
T  52742435 aaactaaaatatgtaaaatgataactattgcgataagagaatttgtatatttcaaaaactggaaacaaaaactatttcaaacaggctctaag 52742344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 48644604 - 48644538
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaaca 248  Q
    ||||||||| |||||||| ||||| |||||||||||||  | || ||||||||||||||||||||||    
T  48644604 aaactaaaacatgtaaaatgataaatattgtgagaagatgatttgtatatttcaaaaattgaaaaca 48644538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 54882998 - 54883065
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaa 249  Q
    ||||||||| | |||||||||||| |||||||||||||  |||| |||||||||||||  ||||||||    
T  54882998 aaactaaaacacgtaaaaggataaatattgtgagaagaggacttctatatttcaaaaaccgaaaacaa 54883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 48944111 - 48944197
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagact 268  Q
    |||| |||| |||||||| |||||||||||| ||||||  |||| ||||||||||||  | |||| ||||| ||||||||| |||||    
T  48944111 aaacaaaaacatgtaaaatgataactattgtaagaagaggacttgtatatttcaaaagctaaaaagaaaaactatttcaaagagact 48944197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 47599447 - 47599410
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaaga 219  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  47599447 aaactaaaacatgtaaaaggataactattgtgagaaga 47599410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 27004532 - 27004452
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  27004532 aaactaaaacatataaaaggataactattgtgagaagaggacttatatatttcaaaaattgaaaacaaaaactatttcaaa 27004452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 6974523 - 6974603
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||    
T  6974523 aaactaaaacatgtaaaatgataactattgtgagaagagcacttatatatttcaaaaactgaaaacaaaaactatttcaaa 6974603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 37060085 - 37060177
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaagt 274  Q
    ||||||||| ||||||||||||||||||||||||||||  | || ||||||||||||| |||||||||||| ||||||||| || ||||||||    
T  37060085 aaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctctaagt 37060177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 4382290 - 4382213
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttc 259  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||    
T  4382290 aaactaaaacatgtaaaatgataactattgtgagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttc 4382213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 13274283 - 13274192
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaagt 274  Q
    ||||||||| ||||||||| ||||||||||||||||||  |||| ||||||||||||||| |||||||||| ||||||||| || ||||||||    
T  13274283 aaactaaaacatgtaaaag-ataactattgtgagaagaggacttgtatatttcaaaaattaaaaacaaaaactatttcaaacaggctctaagt 13274192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 21423448 - 21423368
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||| |||||||||||||||||| ||| |||| ||||||||||||| |||||||||||| |||||||||    
T  21423448 aaactaaaacatgtaataggataactattgtgagatgaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 21423368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 28107494 - 28107574
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||||  | || ||||||||||||| |||||||||||||| |||||||    
T  28107494 aaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaattgtttcaaa 28107574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 5959049 - 5958969
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||||||||||||||  |||||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  5959049 aaactaaaacatgtaaaaggataactattacgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 5958969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 24475938 - 24476018
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||||||| ||||| | || ||||||||||||| |||||||||||| |||||||||    
T  24475938 aaactaaaacatgtaaaaagataactattgtgataagaagatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 24476018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 30609692 - 30609772
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||||||||||||| |||| |||||||||| || ||||||||||||  ||||||||    
T  30609692 aaactaaaacatgtaaaatgataactattgtgagaagaagacttgtatatttcaataactgaaaacaaaaacgatttcaaa 30609772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 37802842 - 37802922
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| ||||| |||| ||||||||| |||| ||||||||||||||| |||||||||| |||||||||    
T  37802842 aaactaaaacatgtaaaaagataaatattatgagaagaagacttgtatatttcaaaaatttaaaacaaaaactatttcaaa 37802922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 15070396 - 15070475
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaa 261  Q
    |||| |||| || |||||||||||||||||||||||||  | || ||||||||||||| |||||||||||| ||||||||    
T  15070396 aaacaaaaacatataaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaa 15070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 30393598 - 30393678
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||| ||| | | ||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  30393598 aaactaaaacatgtaaaaggataaccattatcaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 30393678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 10217361 - 10217451
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| ||||||||| ||||||||| | | |||  ||||| ||||||||||||| |||||| ||||| ||||||||| | |||||||    
T  10217361 aaactaaaacatgtaaaagaataactattctaaaaagggaacttgtatatttcaaaaactgaaaataaaaactatttcaaacatactctaa 10217451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 37140159 - 37140229
Alignment:
Q  201 gataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactcta 271  Q
    ||||||||||| |||||||  |||| ||||||||||||| |||||||||||| ||||||||| || |||||    
T  37140159 gataactattgcgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctcta 37140229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 5807326 - 5807405
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || |||||||||||||||||||| |||  || || ||||||||||||| || ||||||||| |||||||||    
T  5807326 aaactaaaacatataaaaggataactattgtgaaaagggaatttgtatatttcaaaaactg-aaacaaaaactatttcaaa 5807405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 14786317 - 14786264
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttca 235  Q
    ||||||||| |||||| |||||||||||||||||||||  |||| |||||||||    
T  14786317 aaactaaaacatgtaataggataactattgtgagaagaggacttgtatatttca 14786264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 27969566 - 27969513
Alignment:
Q  186 taaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaa 239  Q
    ||||| || ||||||||||||||||||||||||  ||||| |||||||||||||    
T  27969566 taaaacatataaaaggataactattgtgagaagtgaacttgtatatttcaaaaa 27969513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 30757190 - 30757227
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaaga 219  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  30757190 aaactaaaacatgtaaaaggataactattgtgagaaga 30757227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 43022888 - 43022964
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttc 259  Q
    ||||||||| || ||||||||||| ||| |||||||||  |||| ||||||| ||||| | |||||||||||||||||    
T  43022888 aaactaaaacatataaaaggataattat-gtgagaagaggacttgtatattttaaaaactaaaaacaaaaattatttc 43022964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 13062 - 13142
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  13062 aaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 13142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 22265 - 22185
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  22265 aaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 22185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 8163649 - 8163737
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactct 270  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  8163649 aaactaaaacatgtaaaaagataactattgtgagaagagaacttgtatatttcaaaaacagaaaacaaaaactatttcaaacagactct 8163737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 41326124 - 41326044
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||| |||||||||    
T  41326124 aaactaaaacatgtaaaaggataactattgtgagaagaagatttatatatttcaaaaactcaaaacaaaaactatttcaaa 41326044  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 40337072 - 40337164
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaagt 274  Q
    ||||||||| |||||||| |||||||||||||||||||  ||||  ||||||| |||| |||||||||||| ||||||||| |||||||||||    
T  40337072 aaactaaaacatgtaaaatgataactattgtgagaagatgacttgcatatttcgaaaactgaaaacaaaaactatttcaaacagactctaagt 40337164  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 2362388 - 2362476
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactct 270  Q
    ||||||||| | |||||| |||||||||||||||||||| | || ||||||| ||||| |||||||||||||| ||||||| |||||||    
T  2362388 aaactaaaataagtaaaatgataactattgtgagaagaagatttgtatattttaaaaactgaaaacaaaaattgtttcaaacagactct 2362476  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 35589413 - 35589493
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || |||||||||||||||| ||| ||||  |||| |||||||||||||| ||||||||||| |||||||||    
T  35589413 aaactaaaatatataaaaggataactattatgaaaagaggacttgtatatttcaaaaatcgaaaacaaaaactatttcaaa 35589493  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 28089217 - 28089136
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattg-aaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||||| ||||||  | || ||||||||||||| || |||||||||||| |||||||    
T  28089217 aaactaaaacatgtaaaatgataactattgtaagaagatgatttgtatatttcaaaaactgaaaaacaaaaattgtttcaaa 28089136  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 31637797 - 31637748
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatat 231  Q
    ||||||||| || |||||||||||||||| |||||| | |||||||||||    
T  31637797 aaactaaaacatataaaaggataactattatgagaaaataacttatatat 31637748  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 794996 - 794916
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||||| |||||||||    
T  794996 aaactaaaacatgtaaaaggataactattgtgagaagaagacctgtatatttcaaaaactgaaaacaaaaaatatttcaaa 794916  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 18808861 - 18808781
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || |||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||    
T  18808861 aaactaaaacatataaaaggataactattgtgagaagaagacttgtatatttcataaactgaaaacaaaaattatttcaaa 18808781  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 41998885 - 41998975
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    ||||||||| || ||||| ||||| |||||||||||||| |||| ||||||||||||| |||||||||||| ||||||||| || ||||||    
T  41998885 aaactaaaacatataaaaagataaatattgtgagaagaagacttgtatatttcaaaaaatgaaaacaaaaactatttcaaacaggctctaa 41998975  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 571730 - 571650
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||| ||||||||  || ||||||||||||||| |||||||||||| |||||||||    
T  571730 aaactaaaacatgtaaaatgataactattatgagaagaggacgtatatatttcaaaaactgaaaacaaaaactatttcaaa 571650  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 26653950 - 26654026
Alignment:
Q  186 taaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||| ||||||||||||||| ||||||||||||  || | |||||||||||||||||||||||||| |||||||||    
T  26653950 taaaacatgtaaaaggataaccattgtgagaagaggacctgtatatttcaaaaattgaaaacaaaaactatttcaaa 26654026  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 24909514 - 24909604
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    |||| |||| |||||||||||||||||||||||||||| ||||  ||||||| ||||| |||||| ||||| ||||||||| || ||||||    
T  24909514 aaacgaaaatatgtaaaaggataactattgtgagaagagaactagtatattttaaaaactgaaaataaaaactatttcaaacaggctctaa 24909604  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 1585938 - 1585853
Alignment:
Q  187 aaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaa 272  Q
    |||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| | |||||| ||| ||||||||| || ||||||    
T  1585938 aaaacatgtaaaaggataactattgtaagaagaagacttgtatatttcaaaaactaaaaacataaactatttcaaacaggctctaa 1585853  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 39002030 - 39001950
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||  | ||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  39002030 aaactaaaacatgtaaaaggataactattgcaaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 39001950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 11121940 - 11121865
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatt 257  Q
    ||||||||| |||||||| ||||||||||||| |||||  |||| ||||||||||||| |||||||||||| ||||    
T  11121940 aaactaaaacatgtaaaatgataactattgtgcgaagatgacttgtatatttcaaaaactgaaaacaaaaactatt 11121865  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 4792591 - 4792650
Alignment:
Q  199 aggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattattt 258  Q
    ||||||||||||||||||||| ||||| ||||||||||||| | |||||||||| |||||    
T  4792591 aggataactattgtgagaagagaacttgtatatttcaaaaactaaaaacaaaaactattt 4792650  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 3695489 - 3695409
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| |||||||| |||||||||| ||| |||   |||| |||||||||||||  ||||||||||| |||||||||    
T  3695489 aaactaaaacatgtaaaatgataactattatgaaaaggggacttgtatatttcaaaaaccgaaaacaaaaactatttcaaa 3695409  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 7409829 - 7409885
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaa 238  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||  ||||||||||||    
T  7409829 aaactaaaacatgtaaaaggataactattatgagaagagaactattatatttcaaaa 7409885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 36290674 - 36290612
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaa 244  Q
    ||||||||| |||||||| |||||||||||| ||||||  |||| ||||||||||||| ||||    
T  36290674 aaactaaaacatgtaaaatgataactattgtcagaagaggacttgtatatttcaaaaactgaa 36290612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 44272363 - 44272444
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttc-aaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||  ||||| ||| ||| |||| ||||| |||||||| ||||| |||||||||||| |||||||||    
T  44272363 aaactaaaacatgtaaaataataaccattatgaaaagagaacttgtatatttcaaaaaactgaaaacaaaaactatttcaaa 44272444  T

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Target: scaffold0025 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 67955 - 67875
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||||||||||||||| ||||||  |||| ||||||| ||||| ||||||||||||||||||||||    
T  67955 aaactaaaacatgtaaaaggataactattgttagaagaggacttgtatattttaaaaactgaaaacaaaaattatttcaaa 67875  T

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Target: scaffold0302 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 18509 - 18600
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatagactctaag 273  Q
    ||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||| | ||| |||||| ||||||||| || |||||||    
T  18509 aaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactaaaaccaaaaactatttcaaacaggctctaag 18600  T

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Target: scaffold0140 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 21559 - 21479
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| ||||||||  ||||||||||||||||||  | |||||||||||||||| |||||||||||| | |||||||    
T  21559 aaactaaaacatgtaaaataataactattgtgagaagatgatttatatatttcaaaaactgaaaacaaaaactgtttcaaa 21479  T

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Target: scaffold0121 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 37409 - 37492
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaatag 265  Q
    ||||||||| |||||||| ||||||||||| |||||||  |||| |||||||||||||  ||||||||| | ||||||||||||    
T  37409 aaactaaaatatgtaaaatgataactattgcgagaagaggacttgtatatttcaaaaaccgaaaacaaacactatttcaaatag 37492  T

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Target: scaffold0532 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 11402 - 11322
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    |||| |||| |||| |||||||||||| | ||||||||  |||| ||||||||||||| |||||||||||| |||||||||    
T  11402 aaacaaaaacatgttaaaggataactactctgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 11322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 1051 - 971
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || |||||| |||||||||  ||||| || |||| ||||||| ||||| |||||||||||| |||||||||    
T  1051 aaactaaaacatataaaagaataactattacgagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaa 971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 1262 - 1342
Alignment:
Q  182 aaactaaaagatgtaaaaggataactattgtgagaagaaaacttatatatttcaaaaattgaaaacaaaaattatttcaaa 262  Q
    ||||||||| || |||||| |||||||||  ||||| || |||| ||||||| ||||| |||||||||||| |||||||||    
T  1262 aaactaaaacatataaaagaataactattacgagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaa 1342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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