View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1510_high_7 (Length: 453)
Name: NF1510_high_7
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_high_7 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 38392984 - 38392564
Alignment:
| Q |
19 |
aaaattaagttaattagctatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatagacaatataaattcaa |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38392984 |
aaaattaagttgcttagctatttaccttgtcggttacaccgaagcactccttcatgactaaaatgaaaattattcatgctcatagacaatataaattcaa |
38392885 |
T |
|
| Q |
119 |
ccactccttcatgcatcctctaacttgttattttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
38392884 |
ccactccttcatgcatcctctaacttgttattttctttcttttctctccattgaattgttttgttctaatttcagttcttgtggattaagtcatacaaaa |
38392785 |
T |
|
| Q |
219 |
atgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcag |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38392784 |
atgagcataaattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaatgtttgttctgaggctccaccccatattgtttcag |
38392685 |
T |
|
| Q |
319 |
atggtttatggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38392684 |
atggtttatggggtggctacgaaaatggaaggagaccaatgaaatccttcttgatcttgtttgagttacaattggttatcatttttgcactcactcaaat |
38392585 |
T |
|
| Q |
419 |
atgtagttttcttctcaaacc |
439 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
38392584 |
atgtagttttcttctcaaacc |
38392564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 32 - 443
Target Start/End: Complemental strand, 38384132 - 38383703
Alignment:
| Q |
32 |
ttagctatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatagacaatataaattcaaccactccttcatg |
131 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||| | ||||| | | | | |
|
|
| T |
38384132 |
ttagctatttaccttgtcggttacaccaaagcactccttcatgactataatgaaaattattcatcctcatagacaatataaaatgaaccagaacataaag |
38384033 |
T |
|
| Q |
132 |
ca-----tc------ctctaacttgttatttt--------ctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcat |
212 |
Q |
| |
|
|| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
38384032 |
caaatagtcattaatctctagcttgttattttctttctttctttcttttctctccattgaattgttttgttctaatttcaattcttgtggattaagtcat |
38383933 |
T |
|
| Q |
213 |
acaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattg |
312 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
38383932 |
ac-aaaatgagcataaattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaaagtttgttttgaggctccaccccatattg |
38383834 |
T |
|
| Q |
313 |
tttcagatggtttatggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcac |
412 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38383833 |
tttcagatggtttatggggtggccacgataatggaaggagaccaatgaaatccttcttaacattgtttgagttacagttgattatcatttttgcactcac |
38383734 |
T |
|
| Q |
413 |
tcaaatatgtagttttcttctcaaacctttg |
443 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
38383733 |
tcaaatatgtagtttccttctcaaacctttg |
38383703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 150 - 443
Target Start/End: Complemental strand, 38401429 - 38401136
Alignment:
| Q |
150 |
tttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcataaattcaaattttactttgttca |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
38401429 |
tttctttcttttcactccattgaattgttttgttctaatttcaattcttgtgaattaagtcatacgaaaatgagcataaattcaaatgatactttgttct |
38401330 |
T |
|
| Q |
250 |
acgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcagatggtttatggggtggctacgaaaatggaag |
349 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
38401329 |
accaaattaaaagattgaatgaaacaatatacaatgtttgtattgaggctccacctcctattgtttcagatggtttatgggctggccacgaaaatggaaa |
38401230 |
T |
|
| Q |
350 |
gagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaatatgtagttttcttctcaaacctttg |
443 |
Q |
| |
|
|| ||||||||||| || ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38401229 |
gacaccaatgaaattcttctttcccatgtttgagttacaattggttatcatttttgcactcactcaaatatgtagttttcttctcaaacctttg |
38401136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 38401583 - 38401480
Alignment:
| Q |
19 |
aaaattaagttaattagctatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatagacaatataaattcaa |
118 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38401583 |
aaaatttagtttcttaactatttaccttgtcagttacaccgaagcacaccttcatgactataatgaaaattattcatcctcatagacaatataaattcaa |
38401484 |
T |
|
| Q |
119 |
ccac |
122 |
Q |
| |
|
|||| |
|
|
| T |
38401483 |
ccac |
38401480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 32 - 443
Target Start/End: Original strand, 37843798 - 37844222
Alignment:
| Q |
32 |
ttagctatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatagacaatataaattcaaccactccttcatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | ||||| |||| |||||||||||||||||||||| ||||| ||||| ||| |||| | | | | |
|
|
| T |
37843798 |
ttagctatttaccttgtcagttacaccgatgcactcgttcataactataatgaaaattattcatgctcatggacaaaataaaatcagccacaacataaag |
37843897 |
T |
|
| Q |
132 |
catc-----------ctctaacttgttattttctttc--ttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaa |
218 |
Q |
| |
|
|| ||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
37843898 |
caaatagacaataatctctattttgttattttctttccattctctctccattgaattgttttgttctaatttcaattcttgtggaataagtcatacaaaa |
37843997 |
T |
|
| Q |
219 |
atgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcag |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
37843998 |
atgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaagcaggttacaaaatttatttagaggctccaccccatattgtttcag |
37844097 |
T |
|
| Q |
319 |
atggtttatggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaat |
418 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
37844098 |
atggtttatggggtggccatgaaaatggaaggagaccaatgaaatctttcttgaccttgtttgagttacaattggttatcatttttgcactcacgcaaat |
37844197 |
T |
|
| Q |
419 |
atgtagttttcttctcaaacctttg |
443 |
Q |
| |
|
|||| |||||||||||||| ||||| |
|
|
| T |
37844198 |
atgtcgttttcttctcaaatctttg |
37844222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 150 - 443
Target Start/End: Original strand, 37838366 - 37838659
Alignment:
| Q |
150 |
tttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcataaattcaaattttactttgttca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37838366 |
tttctttcttttctctccattgaattgttttgttttcatttcaattcttgtggattaagtcatacaaaaatgagcataaattcaaatgatactttgttct |
37838465 |
T |
|
| Q |
250 |
acgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcagatggtttatggggtggctacgaaaatggaag |
349 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
37838466 |
acgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggctccaccccatattgtttcagatggtttatggagtggtcacgaaaatgaaag |
37838565 |
T |
|
| Q |
350 |
gagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaatatgtagttttcttctcaaacctttg |
443 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
37838566 |
gagaccaatgaaatcttttttgaccttgtttgagttacaattggttatcatttttgcactcacacaaatatgcagtttccttctcaaacctttg |
37838659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 37838225 - 37838310
Alignment:
| Q |
37 |
tatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatagacaatataaattcaaccac |
122 |
Q |
| |
|
|||||| |||| |||||||||| |||||| | ||| |||||| || ||||| |||||| | |||| ||||||||||| |||||||| |
|
|
| T |
37838225 |
tatttaacttgacagttacaccaaagcactcgttcttgactataacgaaaactattcacggtcatcgacaatataaaatcaaccac |
37838310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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