View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1510_low_1 (Length: 663)
Name: NF1510_low_1
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-157; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 36772080 - 36771735
Alignment:
| Q |
14 |
aagaatattctaaaattgaagatgaaaatacattattaaagctagaataagaatgaataaagaagaaatgtctcccaagtacttttgtttacggttttta |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||| |||| ||| |
|
|
| T |
36772080 |
aagaatattctaaaatcgaagatgaaaatacattattaaagttagaataagaatgaataaagaagaaatacctcccaagtattttcgtttatggttctta |
36771981 |
T |
|
| Q |
114 |
tttattgacctaataggtcaataaataaaggttgagagcaagcttaacatggttgaggcggtataagtctgacttgaacatttaaataagggttgagata |
213 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
36771980 |
tttattgacttaataggtcaataaataagggttgagagcaagcttaatatggttgaggcggtatagatctgacttgaatatttaaataagggttgagata |
36771881 |
T |
|
| Q |
214 |
agatctaattggacgacgaggtgagcagatatattttaaacaatcaagttagtgtagagatatgacctagtcggatgaagtgagctgatataactcgaaa |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36771880 |
agacctaattggacgacgaggtgagcagatatattttaaacaatcaagttagtgtagagatatgacctagtcggatgaagtgagctgacataactcgaaa |
36771781 |
T |
|
| Q |
314 |
agtcaaacaaatgatgaaatgacattaggttgggccattaaagtcc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36771780 |
agtcaaacaaatgatgaaatgacattaggttgggccattaaagtcc |
36771735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 425 - 523
Target Start/End: Complemental strand, 36771669 - 36771571
Alignment:
| Q |
425 |
cacatcaattgttccattaaaatggattagcccataagccagtctagcaaagcctgataaaatgaagcaagtctgtcagtgccgatatagtacgcataa |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36771669 |
cacatcaattgttccattaaaatggattagcccataagccagtctagcaaagcctgataaaatgaagcaagtctgtcagtgccgatatagtacacataa |
36771571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 517 - 574
Target Start/End: Complemental strand, 36771484 - 36771427
Alignment:
| Q |
517 |
cgcataactataactataatccctaaataatgcaagtaacataaataagttacataac |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36771484 |
cgcataactataactataatccctaaataatgcaagtaacataaataagttacataac |
36771427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 598 - 644
Target Start/End: Complemental strand, 36771369 - 36771323
Alignment:
| Q |
598 |
agttacattaacctcacctctcactctcagtacctcactgcacagac |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36771369 |
agttacattaacctcacctctcactctcagtacctcactgcacagac |
36771323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 26585679 - 26585712
Alignment:
| Q |
14 |
aagaatattctaaaattgaagatgaaaatacatt |
47 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
26585679 |
aagaatattctaaaactgaagatgaaaatacatt |
26585712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University