View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1510_low_10 (Length: 431)

Name: NF1510_low_10
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1510_low_10
NF1510_low_10
[»] chr4 (2 HSPs)
chr4 (1-93)||(3984579-3984671)
chr4 (13-83)||(4007507-4007574)
[»] chr2 (6 HSPs)
chr2 (348-414)||(11654264-11654330)
chr2 (348-414)||(11668029-11668095)
chr2 (144-190)||(11654503-11654549)
chr2 (144-190)||(11668268-11668314)
chr2 (269-303)||(11654384-11654418)
chr2 (269-303)||(11668149-11668183)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3984671 - 3984579
Alignment:
Q  1 attttgttgagcaaatggtattgttagatcatattaacaaatggaagaggactgtgctgcttagtattatcctatgtatttccttactgcagc 93  Q
    |||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  3984671 atttcgttgagcaaatggaattgtttgatcgtattaacaaatggaagaggactgtgctgcttagcatcatcctatgtatttccttactgcagc 3984579  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 4007574 - 4007507
Alignment:
Q  13 aaatggtattgttagatcatattaacaaatggaagaggactgtgctgcttagtattatcctatgtatttcc 83  Q
    |||||| |||||| ||| |||| ||||||||||| |||||||   |||||||||| |||||||||||||||    
T  4007574 aaatggaattgtttgattatatgaacaaatggaataggactg---tgcttagtatcatcctatgtatttcc 4007507  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 11654330 - 11654264
Alignment:
Q  348 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggata 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11654330 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggata 11654264  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 11668095 - 11668029
Alignment:
Q  348 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggata 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11668095 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggata 11668029  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 11654549 - 11654503
Alignment:
Q  144 gagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11654549 gagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 11654503  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 11668314 - 11668268
Alignment:
Q  144 gagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11668314 gagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 11668268  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 11654418 - 11654384
Alignment:
Q  269 ttatgttggttatgtggtggagaagagctattagg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  11654418 ttatgttggttatgtggtggagaagagctattagg 11654384  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 11668183 - 11668149
Alignment:
Q  269 ttatgttggttatgtggtggagaagagctattagg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  11668183 ttatgttggttatgtggtggagaagagctattagg 11668149  T

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