View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_14 (Length: 405)
Name: NF1510_low_14
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Original strand, 5932532 - 5932914
Alignment:
| Q |
8 |
tgagatgaagaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaat |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5932532 |
tgagaagaagaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaat |
5932631 |
T |
|
| Q |
108 |
ggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagttgggcatggtgc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5932632 |
ggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggcttgcctgcttgtgtgaagaagttgggcatggtgc |
5932731 |
T |
|
| Q |
208 |
ctggtcttattactatagtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaag |
307 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5932732 |
ctggtcttattgctatagtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaag |
5932831 |
T |
|
| Q |
308 |
tcttatgggggatgcctttgggagatatggaaaagcacttttagagatatgtgttgttatcaataacgttggtgttcttattg |
390 |
Q |
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| T |
5932832 |
tcttatgggggatgcctttgggagatatggaaaagcagttttagagatatgtgttgttatcaataacgttggtgttcttattg |
5932914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 22 - 390
Target Start/End: Original strand, 5961432 - 5961800
Alignment:
| Q |
22 |
caaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatggagcttcattttc |
121 |
Q |
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| T |
5961432 |
caaggaagaaaaaggaagttgttgatgaaaatgcacctttgttacctatgtgtcaagaaacagatgctgagtttcatgaattcaatggagcttcatttcc |
5961531 |
T |
|
| Q |
122 |
tggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagttgggcatggtgcctggtcttattact |
221 |
Q |
| |
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||| |||||||||||||| || || |||||||| ||||||||||||||||| ||||| ||||| || || |||||||| ||||| ||||||||| || | |
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| T |
5961532 |
tggggctgttttcaatttgtccaccacagttattggtgctgggatcatgggcttgcccgcttgcgtcaaaaagttgggaatggtacctggtcttcttgcc |
5961631 |
T |
|
| Q |
222 |
atagtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatgggggatg |
321 |
Q |
| |
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||| ||||||||||||| |||||||||||| || |||| |||||| |||||||||| || ||||||||||||||||| ||||||||||||||||| ||| |
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| T |
5961632 |
ataatcctaacagcattattgacagagaaggcaattgagttcatgatcaggttttcgagagcagggaatctttcttcctatggaagtcttatgggagata |
5961731 |
T |
|
| Q |
322 |
cctttgggagatatggaaaagcacttttagagatatgtgttgttatcaataacgttggtgttcttattg |
390 |
Q |
| |
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||||||||| ||| ||||||||||| |||||||||||||| | |||| |||||||||| |||| |||| |
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| T |
5961732 |
cctttgggaaatacggaaaagcactggtagagatatgtgttataatcactaacgttggtattctgattg |
5961800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 97 - 343
Target Start/End: Original strand, 5967017 - 5967263
Alignment:
| Q |
97 |
atgaatttaatggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagtt |
196 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||| |||||||| || ||||| |||||||| |||||||| ||||| |
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| T |
5967017 |
atgaatttaatggagcttcattttctggtgctgttttcaatttatcaaccacaattattggtgctggaattatgggattgcctgcatgtgtgaaaaagtt |
5967116 |
T |
|
| Q |
197 |
gggcatggtgcctggtcttattactatagtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttct |
296 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||| || ||||||||||||||| |||| ||||| |||||||||| ||||||||||| |||||| |
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| T |
5967117 |
agggatggtgcctggtcttattgtcatagtcctaacagctttattgacagagaagtcaattgatttcataatcaggttttctagggcagggaaactttct |
5967216 |
T |
|
| Q |
297 |
tcatatggaagtcttatgggggatgcctttgggagatatggaaaagc |
343 |
Q |
| |
|
|| ||||||| ||||||||| ||||||| ||||| ||| |||||||| |
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|
| T |
5967217 |
tcctatggaaatcttatgggagatgcctatgggaaatacggaaaagc |
5967263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 5982851 - 5983175
Alignment:
| Q |
17 |
gaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatggagcttca |
116 |
Q |
| |
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||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||| | ||||||| || || | |||||||||||| |||||||| |
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| T |
5982851 |
gaaaacaaggaagaagaaggaagtggttgatggaaatgtacctttgttacctaaggcacaagaaacaaatgttgattatcatgaatttaatagagcttca |
5982950 |
T |
|
| Q |
117 |
ttttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagttgggcatggtgcctggtctta |
216 |
Q |
| |
|
||||| ||||||||||||||||| || || ||||| || ||||| || |||||||| |||||||||||||| | |||||||| ||||| ||||||||| |
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| T |
5982951 |
ttttcaggagctgttttcaatttgtcaaccacagtcattggtgccggaatcatgggcttgcctgcttgtgtcagaaagttggggatggtacctggtcttc |
5983050 |
T |
|
| Q |
217 |
ttactatagtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatggg |
316 |
Q |
| |
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|| | ||| |||| |||||||| | ||||| |||||| |||| || || | |||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
5983051 |
ttgccataatcctcacagcattactaacagaaaagtcaattgagtttgtgattaggttttcgagggcagggaatctttcttcctatggaagtcttatggg |
5983150 |
T |
|
| Q |
317 |
ggatgcctttgggagatatggaaaa |
341 |
Q |
| |
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|||||||||||||| ||| |||||| |
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| T |
5983151 |
ggatgcctttgggaaatacggaaaa |
5983175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 5630486 - 5630410
Alignment:
| Q |
105 |
aatggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgc |
181 |
Q |
| |
|
||||||||||||||||| || || |||||||| || |||| || |||| |||||||| ||||||| ||||||||| |
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|
| T |
5630486 |
aatggagcttcattttccggtgccgttttcaacttggcgactacgattattggtgctggaatcatggctttgcctgc |
5630410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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