View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1510_low_17 (Length: 369)
Name: NF1510_low_17
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 35954558 - 35954218
Alignment:
| Q |
14 |
aatatgcagattcgtgatgattttaatgttgggagttcttgagtggttgtggaacacttcaatagcacnnnnnnntagttgt--ttggttggagattatc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
35954558 |
aatatgcagattcgtgatgattttaatgttgggagttcttgagtggttgtggaacacttcaatagcacaaaaaaatagttgtgtttggttggagattatc |
35954459 |
T |
|
| Q |
112 |
ccaagacaaattaccaacccgagtataattatggagaatagccagtttttcgtgattgcatcaacaatgttaggtgctatgttttaatgaaattgaaact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35954458 |
ccaagacaaattaccaacccgagtataattatggagaatagccagtttttcgtgattgcatcaacaatgttaggtgctatgttttaatgaaattgaaact |
35954359 |
T |
|
| Q |
212 |
actagccatttattcgcaagttgcccaaaaacaaagataatttgtgatttgattttcaaatgaatgagatggaatgcgaaaaattgcggaattgaaatgg |
311 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35954358 |
actagccatttactcgcaagttgcccaaaaacaaagataatttgtaatttgattttcaaatgaatgagatggaatgcgaaaaattgcggaattgaaatgg |
35954259 |
T |
|
| Q |
312 |
ctgataattttttaatctttaatgtagtttgtaaagggaag |
352 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
35954258 |
ctgataattttctaatctttaatgtggtttgtaaagggaag |
35954218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 4787204 - 4787100
Alignment:
| Q |
168 |
tgcatcaacaatgttaggtgctatgttttaatgaaattgaaactactagccatttattcgcaagttgcccaaaaacaaagataatttgtgatttgatttt |
267 |
Q |
| |
|
||||||||||||||| || | |||||||||||||||||||| | || ||||| || |||||||| |||| ||||| |||||||| |||| ||||| |
|
|
| T |
4787204 |
tgcatcaacaatgttgagtattttgttttaatgaaattgaaaccgcaagtcatttgtttgcaagttgtgcaaacacaaaaataatttgggattctatttt |
4787105 |
T |
|
| Q |
268 |
caaat |
272 |
Q |
| |
|
||||| |
|
|
| T |
4787104 |
caaat |
4787100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University