View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_2 (Length: 617)
Name: NF1510_low_2
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 63 - 598
Target Start/End: Complemental strand, 51296894 - 51296372
Alignment:
| Q |
63 |
cacctctaagaaatttccaataaaagtagtaaaaattcattccatgtggagaaaaagtgaattgttggttacatgtattatagtttaccaaacatatagc |
162 |
Q |
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| T |
51296894 |
cacctctaagaaatttccaataaaagtagtaaaaattcattccatgtggggaaaaagtgaattgttggttatatgtactatagtttaccaaacatatagc |
51296795 |
T |
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| Q |
163 |
ataaaattttgggtgaaatgatgtaagaagaaccaagaagtgacaaatataattgtgtgttattcccgacactgaaagtagctttgtgctacttagaagc |
262 |
Q |
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| T |
51296794 |
ataaaattttgggtgaaatgatgtaagaagaaccaagaagtgacaaatataattgagtgttattcccgacactgaaagtagctttgtgctacttagaagc |
51296695 |
T |
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| Q |
263 |
catgcgattcaaaggataaacattggttcttgtacaagatgctgcaggaatgatattccaatttaaaatggtacctcactaccttgtcattctaatgtac |
362 |
Q |
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| T |
51296694 |
catgcgattcaaaggataaacattggttcttgtacaagatgctgcaggaatgatattccaatttaaaatggt--------accttctcattctaatgtac |
51296603 |
T |
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| Q |
363 |
atttattgatgattccattcaacctttaccaatggtttccaaagtgagtcaagaattcacacttcttttatgcatgtaacagtaatgtttggcactcaca |
462 |
Q |
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| T |
51296602 |
atttattgatgattccattcaacctttaccaatggtttccaaagtgagtcaagaattcacacttcttttatgcatgtaacagtaatgtttggcactcaca |
51296503 |
T |
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| Q |
463 |
ctacacctcatttgtattgcccctcccggcccgttattaagatttctagttgaccatgtcaagatacaagttcttgactctcttttgaacttgaattttc |
562 |
Q |
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| T |
51296502 |
ctacaccacatttgtattgcccct-----cccgttattaagatttctagttgaccatgtcaagatacaagttcttgactctcttttgaacttgaattttc |
51296408 |
T |
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| Q |
563 |
ttctaacgtgggcttagaaatagattaggcaatatg |
598 |
Q |
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| T |
51296407 |
ttctaatttgggcttagaaatagattaggcaatatg |
51296372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 51297248 - 51297218
Alignment:
| Q |
10 |
catcatcagacggtgatcgactaattgcatc |
40 |
Q |
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| T |
51297248 |
catcatcagacggtgatcgactaattgcatc |
51297218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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