View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1510_low_23 (Length: 337)
Name: NF1510_low_23
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_23 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 34)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 7587592 - 7587906
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
7587592 |
aactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaatacataacccttgggaa |
7587691 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7587692 |
atattgaacaaaaggcaaaacaacgctttagattggatgggagattatggtaactcaatctcaatactgagttaatttcatcaccacccttcgatacatg |
7587791 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacat |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7587792 |
ccacatatctgtctccaatatcttaaaccattcagcttgagaaaattttctttgcaggagtttccccaatgttttcacagctagaggcaaccctccacat |
7587891 |
T |
|
| Q |
318 |
ttctctacaatcttc |
332 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7587892 |
ttctctacaatcttc |
7587906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 8569255 - 8568943
Alignment:
| Q |
20 |
ctcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaat |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8569255 |
ctcttcttcacttttgtctcttttgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaaa |
8569156 |
T |
|
| Q |
120 |
attgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatgcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||| |
|
|
| T |
8569155 |
attgaacaataggcaaaacaacgcttgagattggaagggagattatggtaactcaatctcaatactgggttaatttcatcgtcacccttcgataaatgcc |
8569056 |
T |
|
| Q |
220 |
acatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacattt |
319 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
8569055 |
acatatcagtctccaatatgttagaccattcaccttgagaaaattttctttgcaagagattccccaatgttttcacagctaaaggcaaccctccacactt |
8568956 |
T |
|
| Q |
320 |
ctctacaatcttc |
332 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8568955 |
ttctacaatcttc |
8568943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 6520476 - 6520299
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
|||| ||||||||||||||||| || | |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
6520476 |
caaaatcttcttcacttttgtccaatccgtaacacttcaacaaaccttctgccatccaaagcttgatcaatttatcttttttaaatttataacccttggg |
6520377 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6520376 |
aaaaatagaacaatatgcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
6520299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 8454369 - 8454545
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
8454369 |
caaactcttcttcacttctgttagatccgcaacacttcaacaaaccttctgccatccaaagcatgatcagttcatcttttttaaatttatgacccttggg |
8454468 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaa |
192 |
Q |
| |
|
||| || |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8454469 |
aaaaatggaacaataggaaaagcaacgctttagattagaagggagattatggtaactcaatctcagtactgagttaa |
8454545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 6735705 - 6736011
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||| |
|
|
| T |
6735705 |
caaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaagcttgatcaatacttcttttttaaatctataacccttggg |
6735804 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgataca |
215 |
Q |
| |
|
|| || |||||||||||||| ||||||||||||| || ||||||||||||||||||||||| | |||||||||||| | | || | |||| | |
|
|
| T |
6735805 |
gaaaatggaacaataggcaaagcaacgctttagatctgatgggagattatggtaactcaatcttagtactgagttaatgttgtggtccccatctgataaa |
6735904 |
T |
|
| Q |
216 |
tgccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccac |
315 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| || ||||| |||| | |||| || | ||||||| ||| | |||||||||||||||||||| |
|
|
| T |
6735905 |
cgccacatatcagtctccaatatcttaatccattcatgttcagaaagttttttacgcaaaagttggcccaatgattttatagctagaggcaaccctccac |
6736004 |
T |
|
| Q |
316 |
atttctc |
322 |
Q |
| |
|
| ||||| |
|
|
| T |
6736005 |
acttctc |
6736011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 6946986 - 6947148
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
6946986 |
aactcttcttcacttttgtctcttctgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttgggaa |
6947085 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
| || || |||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
6947086 |
aaatggagcaataggcaaaacaacgcttccgattggaaggaagattgtggtaactcaatctca |
6947148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 6449101 - 6448855
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
6449101 |
caaactcttcttcacttttgtctgatccgcaacacttcaacataccttctgccatccaaagcttgatcaattcatcctttttaaatctataacccttagg |
6449002 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgataca |
215 |
Q |
| |
|
|| || || ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| || | | | |||| | |
|
|
| T |
6449001 |
gaaaatggagcaataggcaaagcaacactttagactggaagggagattatggtaactcaatctcagtactgagttaatggaatggtctctgtctgataaa |
6448902 |
T |
|
| Q |
216 |
tgccacatatcggtctccaatatcttaaaccattcagcttgagaaaa |
262 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| |||||||||| |
|
|
| T |
6448901 |
cgccacatatcagtctccaatatcttcatccattcatcttgagaaaa |
6448855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 8589446 - 8589744
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||| | || |||||| ||||| ||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
8589446 |
aactcttcttcacttttgtgtgatccgcaacacttcaataaaccttctgccatccagagcttgatcaattcacctttttcaaattcataacccttgggaa |
8589545 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
| || |||||||| | ||| ||| |||||||| |||||||||||||||||||||| ||||||| |||||||| || | | | || | |||| | | |
|
|
| T |
8589546 |
aaatggaacaataagaaaagcaatgctttagaatggaagggagattatggtaacttaatctcagaactgagtttatgctgtgttccccatctgataaacg |
8589645 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccaca |
316 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||| ||||||||| |||||| ||||||| | |||| || ||| ||||||| ||||||||||||||| |
|
|
| T |
8589646 |
ccacatattagtctccaatatcttaatccactcatgttgagaaaaatttcttcgcaagagttggcccattgattttacagctaaaggcaaccctccaca |
8589744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 5298451 - 5298758
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||||||| |||| || ||| ||| || ||||||||||||||||||||||||||| |||| |||||| | || ||| |||||| | |||| |
|
|
| T |
5298451 |
aactcttcttcagttttatcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaatataacctcttggaa |
5298550 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
|||| |||||||| | |||||||||||| ||||| |||||||||| |||| ||||||| ||||| ||||||||||| | |||||| |||| | |
|
|
| T |
5298551 |
atatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaatgttactctcaccctctgataaaca |
5298650 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacat |
317 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
5298651 |
ccacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgcttttacagctagaggcaaccctccacac |
5298750 |
T |
|
| Q |
318 |
ttctctac |
325 |
Q |
| |
|
|| ||||| |
|
|
| T |
5298751 |
ttttctac |
5298758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 4389252 - 4388942
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||||||||||| || || ||||||||| |||| |||||| || | ||| | ||| ||||||| |
|
|
| T |
4389252 |
aactcttcttcacttttgtcacttccgcaacacttcaacaaaccatccgctatccaaagcttgattaattcacgcttgtcaaaaatgtgacctttgggaa |
4389153 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
|||| |||||||| | ||||||||| || ||| |||||||||||| ||||||||||||||||| |||||| ||||| || |||| | |||| ||| |
|
|
| T |
4389152 |
atatggaacaataagaaaaacaacgtttaagaatggaagggagatgatggtaactcaatctcagtactgaattaatgttattgtcaccttctgataaatg |
4389053 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacat |
317 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |||||| ||||||||| |||||||||| ||||| ||||| ||||||| || |||||| |||| |
|
|
| T |
4389052 |
ccacatatcggtctccaatatcctaacccattcacgttgagagaattttcttcgcaagagatttcccaacgtttttacagctaatggaaaccctacacac |
4388953 |
T |
|
| Q |
318 |
ttctctacaat |
328 |
Q |
| |
|
|| |||||||| |
|
|
| T |
4388952 |
ttatctacaat |
4388942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 8471281 - 8471456
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| | | ||| ||| ||||||| |||| |
|
|
| T |
8471281 |
aactcttcctcacttttgtctcttctgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaaacccttaggaa |
8471380 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|||| || || ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
8471381 |
atatagagcagtaggcaaaacagcgcttcagattagaagggaggttatggtaactcaatctcaatgccgagttaat |
8471456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 6899833 - 6900131
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||| | |||| | || | ||| ||||| ||||| |||| |
|
|
| T |
6899833 |
aactcttcttcacttttgtctcttccgcaacacttcagcaaaccttctgccatccaaagcttgattacttcacccttctcaaactcatagccctttggaa |
6899932 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
||| |||||||| |||||||| |||| |||||||||||||| ||| ||||||||||| |||||| | |||||| | | ||||| | || | | |
|
|
| T |
6899933 |
ataaagaacaataatcaaaacaatgcttcagattggaagggaggttaaggtaactcaatttcaataaagggttaatgttgttattaccctctggtaaacg |
6900032 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccaca |
316 |
Q |
| |
|
||| | ||| |||||||| ||||||| ||| |||| || ||| || ||||||| ||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
6900033 |
ccagaaatcagtctccaacatcttaacccaatcaggttcagagaactttctttccaagagattccccaatgttttcagagctaaaggcaacccttcaca |
6900131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 6554752 - 6554575
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||| |||||||| | ||||||| |||| ||| |||||||| |
|
|
| T |
6554752 |
caaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaagcttgatcaatacttctttttcaaatctatagcccttggg |
6554653 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|| || |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
6554652 |
gaaaatggaacaatacgcaaagcaacgctttagatccgaagggagattatggtaactcaatcttagtactgagttaat |
6554575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 6480296 - 6480132
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
6480296 |
caaactcttcttcacttttgtatgatccgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttggg |
6480197 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
|| || ||||| ||||||| ||||||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
6480196 |
gaaaatggaacagaaggcaaagcaacgcttttgatcggaagggagattgtggtaactcaatctca |
6480132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 325
Target Start/End: Original strand, 6258979 - 6259251
Alignment:
| Q |
56 |
caaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagattggaa |
155 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||| | |||| ||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| |
|
|
| T |
6258979 |
caaaccttttgccatccaaagcttgattaattcacccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaa |
6259078 |
T |
|
| Q |
156 |
gggagattatggtaactcaatctcaatactgagttaa---ttccatcaccacccttcgatacatgccacatatcggtctccaatatcttaaaccattcag |
252 |
Q |
| |
|
||||| || ||||||||| |||||| | || | || | | | ||||||| | || | |||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
6259079 |
gggaggctaaggtaactcattctcaaagcggaataaatgttgctgttgtcacccttgggtaaacgccacaaatcagtctccaatatcttaacccattcat |
6259178 |
T |
|
| Q |
253 |
cttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacatttctctac |
325 |
Q |
| |
|
|| ||| || ||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| ||||| |
|
|
| T |
6259179 |
tttcagagaactttctttgcaagagaatccccaatgttttcagagctgaaggcaaccccccacatttttctac |
6259251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 6591637 - 6591333
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| || | ||| |||||||||||||||||| |||| |||||| | || | ||| ||||| |||||||||| |
|
|
| T |
6591637 |
aacttttcttcacttttgtgtctttcccaacactttagcaagccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaa |
6591538 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||| ||||| ||| ||||||||||||||| ||| | |||||| | |||||| | |||| ||| |
|
|
| T |
6591537 |
atatagaacaataagcaaaacaacgcttcagattggatgggaggttaaggtaactcaatctcagtacggggttaatgctgtcacca---tctgataaatg |
6591441 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacat |
317 |
Q |
| |
|
||||||||| |||||||||||||| | |||||| | | ||| |||||| ||||||| || | ||||| |||||| | ||||| ||| | ||| ||||| |
|
|
| T |
6591440 |
ccacatatcagtctccaatatcttcatccattcggttacagagaattttttttgcaaaagttgccccattgtttttagagctaaaggaatccccccacac |
6591341 |
T |
|
| Q |
318 |
ttctctac |
325 |
Q |
| |
|
|| ||||| |
|
|
| T |
6591340 |
ttttctac |
6591333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 6882249 - 6882556
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||| ||| |||||||||||| | ||| |||||||||||||||||||||||||| | || | |||| | || | || ||||| |||||||||| |
|
|
| T |
6882249 |
aactcttgttcgcttttgtctcttttgtgacacttcaacaaaccttctgccatccaaagtttaattagttcacccttctcaagctcatagcccttgggaa |
6882348 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat-tccatcaccacccttcgatacat |
216 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||| || ||||||||||||||| || ||||||| | || |||||| | || | |
|
|
| T |
6882349 |
atatagaacaataagcaaaacaacgcttcagattggaagggaggataaggtaactcaatctcagtaacaagttaatgtagat-ttcaccctcgggtaaac |
6882447 |
T |
|
| Q |
217 |
gccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccaca |
316 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |||||||| || ||| |||||| || |||||||||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
6882448 |
gccacaaatcagtctccaataccttaatccattcagattcagagaatttttttagcaagagattccccaatgttttcagtgctaaaggcaaccccccaca |
6882547 |
T |
|
| Q |
317 |
tttctctac |
325 |
Q |
| |
|
|| ||||| |
|
|
| T |
6882548 |
cttttctac |
6882556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 111 - 325
Target Start/End: Original strand, 5267869 - 5268083
Alignment:
| Q |
111 |
ttgggaaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcg |
210 |
Q |
| |
|
|||||||||| |||||||| | |||||| ||||| |||||||||||||||| ||||||||||||||||| |||||| ||||| | |||| | | |
|
|
| T |
5267869 |
ttgggaaataaggaacaataagaaaaacagcgcttcagattggaagggagatgatggtaactcaatctcagtactgaattaatgttaatgtcaccttctg |
5267968 |
T |
|
| Q |
211 |
atacatgccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccc |
310 |
Q |
| |
|
||| | |||||||||| |||||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||||| ||||| ||||||| ||| ||||| |
|
|
| T |
5267969 |
ataaacgccacatatctgtctccaatatcttaacccattcatgttgagagaattttcttcgcaagagatttcccaaagtttttacagctaaaggtaaccc |
5268068 |
T |
|
| Q |
311 |
tccacatttctctac |
325 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
5268069 |
tccacacttatctac |
5268083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 6916846 - 6917008
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||| |||||| | || | ||| ||||| |||||||||| |
|
|
| T |
6916846 |
aactcttcttcacttttgtctcttccacaacacttcagcaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaa |
6916945 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
|||| ||||| || ||||||||| |||| ||||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
6916946 |
atatggaacagtaagcaaaacaatgcttcagatttgaagagagattaaggtaactcattctca |
6917008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 6839213 - 6838897
Alignment:
| Q |
21 |
tcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaata |
120 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||| | | ||| ||| ||||| | ||||||| |
|
|
| T |
6839213 |
tcttcttcacttttgtctcttccgcagtatttcagcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaaacccctaggaaata |
6839114 |
T |
|
| Q |
121 |
ttgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaa---ttccatcac---cacccttcgatac |
214 |
Q |
| |
|
||||| ||||||||||| || || | | |||||||||| |||||||||||||||||||| | ||||||| | | ||||| |||| | | || |
|
|
| T |
6839113 |
cagaacagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaagccgagttaatgttactatcaccatcaccatcagctaa |
6839014 |
T |
|
| Q |
215 |
atgccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctcca |
314 |
Q |
| |
|
||||||| || | ||| | |||||| ||||||| || ||| |||||| | ||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6839013 |
gcgccacatgtcagcctctagtatcttttcccattcatgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctcca |
6838914 |
T |
|
| Q |
315 |
catttctctacaatctt |
331 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
6838913 |
cacttatctacaatctt |
6838897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 334
Target Start/End: Original strand, 6245070 - 6245348
Alignment:
| Q |
56 |
caaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagattggaa |
155 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||| |||| ||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| |
|
|
| T |
6245070 |
caaaccttctgccatccaaagtttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaa |
6245169 |
T |
|
| Q |
156 |
gggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatgccacatatcggtctccaatatcttaaaccattcagctt |
255 |
Q |
| |
|
||||| ||| ||||||||| ||| | || || | ||| ||| || | || | |||||| ||| ||||| |||||||||| ||||||| || |
|
|
| T |
6245170 |
gggaggttaaggtaactcattcttagaacggaataaatgttgctgtcactctcaggtaaacgccacaaatcagtctctaatatcttaacccattcatttt |
6245269 |
T |
|
| Q |
256 |
gagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacatttctctacaatcttcat |
334 |
Q |
| |
|
||| ||| |||||||||||||| ||||||||||||||| ||||| |||| |||| |||||||| ||||| || ||||| |
|
|
| T |
6245270 |
cagagaatcttctttgcaagagaatccccaatgttttcagagctaaaggcgaccccccacatttttctactattttcat |
6245348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 6168636 - 6168791
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||| || | |||||||| ||||||||||||| |||| ||| |||| |||| ||| | |||||||||||||| |
|
|
| T |
6168636 |
aactcttcttcatttttgtcttttccgcaacactttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaacttataacccttgggaa |
6168735 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactc |
173 |
Q |
| |
|
|||| |||||||| ||||||||| |||| ||||| |||||||| ||| |||||||| |
|
|
| T |
6168736 |
atatagaacaatatgcaaaacaatgcttcagatttgaagggaggttaaggtaactc |
6168791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 6722378 - 6722080
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||||||| |||||| |||||||||| | || | |||| || | ||| ||||| |||||||||| |
|
|
| T |
6722378 |
aactcttgttcacttttgtctcttccgcaacacttcaacaaatcttctgtcatccaaagcttaattagttcactcttctcaaactcatagcccttgggaa |
6722279 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||| ||||||||| ||| | |||||||||| | ||| | |||||| | |||||| |||| | |
|
|
| T |
6722278 |
atatagaacaataagcaaaacaacgcttcagatcggaagggaggttaaagaaactcaatcttagtacggggttaatgttgttctcaccctctgataaaca |
6722179 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccaca |
316 |
Q |
| |
|
||||| ||| ||||||||||||| | ||||||| || ||||||| | || ||| ||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
6722178 |
ccacaaatcagtctccaatatctgatcccattcaagtttagaaaatcgtattctcaaaagattacccaatgttttcagagctaaaggcaaccctccaca |
6722080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 325
Target Start/End: Complemental strand, 13270805 - 13270533
Alignment:
| Q |
56 |
caaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagattggaa |
155 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||| |||| |||| ||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| |
|
|
| T |
13270805 |
caaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaatatgcaaaacaatgcttcagattggaa |
13270706 |
T |
|
| Q |
156 |
gggagattatggtaactcaatctcaatactgagttaattccatcac---cacccttcgatacatgccacatatcggtctccaatatcttaaaccattcag |
252 |
Q |
| |
|
|| || || ||||||||| ||||| | || ||| | | | |||| | || | |||||||| ||| |||||||||||||||| ||||| | |
|
|
| T |
13270705 |
ggtaggctaaggtaactcattctcagaatggaaaaaatgctgttgctgtcaccttcggagaaatgccacaaatcagtctccaatatcttaacccatttaa |
13270606 |
T |
|
| Q |
253 |
cttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacatttctctac |
325 |
Q |
| |
|
|| ||| |||||||||||||||||| ||||||||||||||| ||||| |||||| || |||||||| ||||| |
|
|
| T |
13270605 |
tttcagagaattttctttgcaagagaatccccaatgttttcagagctaaaggcaaacccccacatttttctac |
13270533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 105 - 316
Target Start/End: Original strand, 5249976 - 5250187
Alignment:
| Q |
105 |
taacccttgggaaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccac |
204 |
Q |
| |
|
||||| || |||||||| |||||||| | ||| |||||||| ||| | ||||||||| ||||||||||||||||| |||||| ||||| | | | |
|
|
| T |
5249976 |
taacctttaggaaatatggaacaataagaaaagcaacgcttaagaatagaagggagacaatggtaactcaatctcagtactgaattaatgttactctcgc |
5250075 |
T |
|
| Q |
205 |
ccttcgatacatgccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagagg |
304 |
Q |
| |
|
||| |||| | |||||||||| |||||||||||||||| ||| ||| ||||||||| |||||| |||||||||| ||||| ||||| ||||||| || |
|
|
| T |
5250076 |
cctctgataaacgccacatatctgtctccaatatcttaacccaatcacgttgagaaaactttcttcgcaagagatttcccaaagtttttacagctaatgg |
5250175 |
T |
|
| Q |
305 |
caaccctccaca |
316 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5250176 |
caaccctccaca |
5250187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 325
Target Start/End: Original strand, 6142064 - 6142338
Alignment:
| Q |
51 |
ttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagat |
150 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |||||| | || | ||| ||||| |||||||||||||| |||||||| ||||||||| |||| |||| |
|
|
| T |
6142064 |
ttcaagaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaatgcttcagat |
6142163 |
T |
|
| Q |
151 |
tggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatgccacatatcggtctccaatatcttaaaccattc |
250 |
Q |
| |
|
|||||||| || ||||||| | ||||| || || ||||| | |||||| | || | |||||| ||| |||||||||||| ||| |||||| |
|
|
| T |
6142164 |
cagaagggaggctaaggtaactgattctcagaacggaattaatgtttccgtcaccctctggtaaacgccacaaatcagtctccaatatcctaacccattc |
6142263 |
T |
|
| Q |
251 |
agcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacatttctctac |
325 |
Q |
| |
|
| || ||| |||||||| | ||||||| ||||||||||||||| ||||| |||||||| ||||| || ||||| |
|
|
| T |
6142264 |
aatttcagagaattttctattcaagagaatccccaatgttttcagagctaatggcaaccccccacacttttctac |
6142338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 7749747 - 7749909
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||| || | ||| |||||||||||||||||| |||| || || || | ||| ||||| ||||| |||| |
|
|
| T |
7749747 |
aactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaacccacgcttctcaaactcatagccctttggaa |
7749846 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
7749847 |
atatagaacaataagcaaaacaacgcttcagattggaagggaggttaaggtaattcaatctca |
7749909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 6265436 - 6265737
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||| || |||||||||||||||||||||||| |||| |||||| | | | ||| |||||||||||||||| |
|
|
| T |
6265436 |
aactcttctttgcttttgtttcttccgcaacaatttaacaaaccttctgccatccaaagcctgattaattcaccctcctcaaactcataacccttgggaa |
6265535 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
| || ||| | |||||||||||||| ||||||| |||||| || ||||| || |||| | | ||||| | | |||||| | || | |
|
|
| T |
6265536 |
gattagaccaacaagcaaaacaacgcttcagattgggagggaggctaaggtaatgcatcctcagagcaaaattaatgcagttgtcaccctcgggtaaaca |
6265635 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacat |
317 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||| | ||| ||||||||||| |||||| ||||||||||||||| || || ||||||||| |||||| |
|
|
| T |
6265636 |
ccacaaatcagtctccaatatctcaacccattcagttacagagaattttctttggaagagaatccccaatgttttcagagttaaaggcaaccccccacat |
6265735 |
T |
|
| Q |
318 |
tt |
319 |
Q |
| |
|
|| |
|
|
| T |
6265736 |
tt |
6265737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 334
Target Start/End: Original strand, 6168836 - 6168952
Alignment:
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacat |
317 |
Q |
| |
|
||||| ||| ||||| |||||||||| ||||||| || ||| ||| |||||||||||||| ||||||||||||| | ||| | |||| |||| |||||| |
|
|
| T |
6168836 |
ccacaaatcagtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgtttttagagcaaaaggcgaccccccacat |
6168935 |
T |
|
| Q |
318 |
ttctctacaatcttcat |
334 |
Q |
| |
|
|| ||||| || ||||| |
|
|
| T |
6168936 |
ttttctactattttcat |
6168952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 6520275 - 6520176
Alignment:
| Q |
217 |
gccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccaca |
316 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||| |||||||||| ||| || |||| || | ||||||| ||| | ||||| ||||||||| ||||| |
|
|
| T |
6520275 |
gccacatatcagtctccaatatctccatccattcatcttgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccaca |
6520176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 6947185 - 6947284
Alignment:
| Q |
217 |
gccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccaca |
316 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||| |||||||||| ||| || |||| || | |||| || ||| | ||||| ||||||||||||||| |
|
|
| T |
6947185 |
gccacatatcagtctccaatatctgcatccattcatcttgagaaaacttttttcgcaaaagttggcccagtgattttatagctaaaggcaaccctccaca |
6947284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 8471517 - 8471591
Alignment:
| Q |
254 |
ttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacatttctctacaat |
328 |
Q |
| |
|
||||||| ||||| | |||| || || ||||||||||||||||||| ||||| ||||||||| || |||||||| |
|
|
| T |
8471517 |
ttgagaatattttttccgcaaaaggtttcccaatgttttcacagctaaaggcagccctccacacttatctacaat |
8471591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 6480095 - 6480050
Alignment:
| Q |
217 |
gccacatatcggtctccaatatcttaaaccattcagcttgagaaaa |
262 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| |||||||||| |
|
|
| T |
6480095 |
gccacatatcagtctccaatatcttcatccattcatcttgagaaaa |
6480050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 7749943 - 7750051
Alignment:
| Q |
217 |
gccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccaca |
316 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||| || | | ||||| ||||||| | | ||||||||||| | ||||| ||||||||| ||||| |
|
|
| T |
7749943 |
gccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccccaatgtttctagagctaaaggcaaccccccaca |
7750042 |
T |
|
| Q |
317 |
tttctctac |
325 |
Q |
| |
|
|| ||||| |
|
|
| T |
7750043 |
cttttctac |
7750051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 6573607 - 6573295
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
6573607 |
aactcttgttcacttttgtctcttccgcaacatttcagcaaaccttcagccatccaaaggttgatcaattcatctttttcaaatttataacccttgggaa |
6573508 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgatacatg |
217 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
6573507 |
atatggaacaatatgcaaaacaacgctttagattggaagggagattatgataactcaatctcaataccgagttaatttcatcattgcccttcgatacatg |
6573408 |
T |
|
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacat |
317 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
6573407 |
ccacatatcagtttccaatatcttaaaccattcaccctgagaaaattttctttgcaagagattccccaatgttttcacggctaaaggcaaccctccacat |
6573308 |
T |
|
| Q |
318 |
ttctctacaatct |
330 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
6573307 |
ttgtctacaatct |
6573295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 7791 - 7539
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| |||||||||| ||||||||||| |||||||| | ||||||| |||| ||| |||||||| |
|
|
| T |
7791 |
caaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctcccatccaaagcttgatcaatacttctttttcaaatctatagcccttggg |
7692 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccacccttcgataca |
215 |
Q |
| |
|
||| || |||||||||| ||| |||||| |||||| |||||||||||||||||||||||||||| |||||||||||| | | | || | |||| | |
|
|
| T |
7691 |
aaaaatggaacaataggaaaagcaacgccttagatcagaagggagattatggtaactcaatctcagtactgagttaatggtgtgatccccgtctgataaa |
7592 |
T |
|
| Q |
216 |
tgccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttct |
268 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
7591 |
cgccacatgtcggtctccaatatcttaatccattcatgttcagaaaattttct |
7539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 35140618 - 35140494
Alignment:
| Q |
56 |
caaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagattggaa |
155 |
Q |
| |
|
||||||||||| |||||||||| |||| ||| |||| |||| ||| |||||||||||||||||||| ||| |||| ||||||||| |||| ||||||||| |
|
|
| T |
35140618 |
caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaa |
35140519 |
T |
|
| Q |
156 |
gggagattatggtaactcaatctca |
180 |
Q |
| |
|
||||| || ||||||||| ||||| |
|
|
| T |
35140518 |
gggaggctaaggtaactcattctca |
35140494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 35140443 - 35140371
Alignment:
| Q |
228 |
gtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagcta |
300 |
Q |
| |
|
|||||||||||||||| ||||||| || || |||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
35140443 |
gtctccaatatcttaacccattcattttcggagaattttctttgcaagagaatccccagtgttttcagagcta |
35140371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 25242445 - 25242285
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| |||| ||| |||| ||| ||||||||| |||| |||||| | || ||| ||||||| || |||| |
|
|
| T |
25242445 |
aactcttcttcacttttgtttgttctacaacacttcagcaagccttatgctatccaaagcttgattaattcacccttgcaaaaagcataacctttaggaa |
25242346 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatct |
178 |
Q |
| |
|
|||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25242345 |
atatggaacagtaactaaaacaacgcttcagattggaagggagattatggtaactcaatct |
25242285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 25242269 - 25242162
Alignment:
| Q |
218 |
ccacatatcggtctccaatatcttaaaccattcagcttgagaaaattttctttgcaagagattccccaatgttttcacagctagaggcaaccctccacat |
317 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||| |||||| ||||||||| |||||||||||||| |||||| ||||||| ||||||| ||||||| |
|
|
| T |
25242269 |
ccacatattcgtttccaatatcttaacccattcatgttgagagaattttcttcgcaagagattccccgttgtttttacagctaaaggcaacgctccacac |
25242170 |
T |
|
| Q |
318 |
ttctctac |
325 |
Q |
| |
|
|| ||||| |
|
|
| T |
25242169 |
ttttctac |
25242162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 190 - 140
Alignment:
| Q |
64 |
ctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgg |
114 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| | ||||||||||||||| |
|
|
| T |
190 |
ctgccatccaaagcttaatcaattcatctttttcatattcataacccttgg |
140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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