View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_25 (Length: 316)
Name: NF1510_low_25
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 51445475 - 51445762
Alignment:
| Q |
19 |
cttattgaccaaataactgtataattcaataaacttcacgggtatcatt--acttgtattacttctacatcaaatttcagaaagnnnnnnnnnnnncata |
116 |
Q |
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| T |
51445475 |
cttattaaccaaataactgtataattcaataaacttcacgggtatcattttacttgtattacttctacatcaaatttcagaaagaaatcaaaaaa-cata |
51445573 |
T |
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| Q |
117 |
agaaaatttgtccacctttttaaggttatagggattcagaaaaacattaaaagacaaataaatttaagaacagtgatatctaaaggtatatcatatttta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51445574 |
agaaaatttgtccacctttttaaggttatagggattcagaaaaacattaaaagacaaataaatttaagaacagtgatatctaaaggtatatcatatttta |
51445673 |
T |
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| Q |
217 |
ttacttttatatgttcatggtttacaaggtatgctcagtgtttaaatttttaaattcatatacctgtaattttattataaagtattcat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51445674 |
ttacttttatatgttcatggtttacaaggtatgctcagtgtttaaatttttaaattcatatacctgtaattttattataaagtattcat |
51445762 |
T |
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