View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_27 (Length: 311)
Name: NF1510_low_27
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 4105300 - 4105048
Alignment:
| Q |
4 |
tctctctctcttcaccctttggtgagactcacataataaattgtatcaaaataaataagttatgttgaaatgtaatgatatggagttatattgattagac |
103 |
Q |
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| T |
4105300 |
tctctctctcttcatcctttggtgagactcacataataaattgtatcaaaatatataagttatgtt-aaatgtaatgatatggagttatattgattagac |
4105202 |
T |
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| Q |
104 |
ttatttaatatcnnnnnnnaggttatgggttagatagattggatgtttattaagtattattaacatt-nnnnnnnnttaaggatatatgaatatgattgg |
202 |
Q |
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| T |
4105201 |
ttatttaatatc-ttttttaggttatgggttatagagattaaatgtttatcaagtattattaatattaaaaaaaaattaaggatatatgaatatgattgg |
4105103 |
T |
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| Q |
203 |
tttgacggataaggtaggaaatcataagagagggtgataagaatgtctagatccct |
258 |
Q |
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| T |
4105102 |
tttgacggataaggtgggaaatcat-agagagggtgatgagaatgtctagatccct |
4105048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 4103209 - 4103173
Alignment:
| Q |
269 |
gaatgtctagagtttaatgggcattcagagcataata |
305 |
Q |
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| T |
4103209 |
gaatgtctagagtttaatgggcattcagagcataata |
4103173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 53523193 - 53523149
Alignment:
| Q |
37 |
taataaattgtatcaaaataaataagttatgttgaaatgtaatga |
81 |
Q |
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| T |
53523193 |
taataaattgtataaaaatgaataagttttattgaaatgtaatga |
53523149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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