View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_28 (Length: 308)
Name: NF1510_low_28
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 37145362 - 37145639
Alignment:
| Q |
15 |
atcatcatcgaaaaagagcatagagttatatggcaccccggtctttgagtgaattttctgaaaatgttctgttttgtgtgtagagctgtaaaatatttcc |
114 |
Q |
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| T |
37145362 |
atcatcatcgaaaaagagcatagagttatatggcaccccggtcttggagtgaattttctgaaaatgttctgttttgtgtgtagagctgtaaaatatttcc |
37145461 |
T |
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| Q |
115 |
taaacaataaaaaagagaaattaaatttggacctaacaagaacttgccgtaaaataaatatacatacaaataagtgcaatagaaaagtggattgaagtgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37145462 |
taaacaataaaaaagagaaattaaatttggacctaacaacaacgtgccgtaaaataaatatacatacaaataagtgcaatagaaaagtggattgaagtgt |
37145561 |
T |
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| Q |
215 |
tcgtctttccaccgaggaacaaacctgggcgacaaacattgaggtgattttgagtttgtcaagatatgtggttgctat |
292 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37145562 |
tcgtctttccactgaggaacaaacctgggcaacaaacattgaggtgattttgagtttgtcaagataggtggttgctat |
37145639 |
T |
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