View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_29 (Length: 305)
Name: NF1510_low_29
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_29 |
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| [»] scaffold1454 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 52809804 - 52809524
Alignment:
| Q |
8 |
cgaagaatataatttcggggtaattgtttactcttaaatttattatccttaaatttagtataaattgctaattaactttttaattcaagcttttacgatc |
107 |
Q |
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| T |
52809804 |
cgaaaaatataatttgggggtaattgtttactcttaaatttattatccttaaatttagtataaattgctaattaactttttaattcaagcttttacgatc |
52809705 |
T |
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| Q |
108 |
tattatttcttcctcgccgtcgttttttcctttctttcattcagttatcttgatttcttcgatcatggcttccaattcgcaaaataattttcttgctggt |
207 |
Q |
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| T |
52809704 |
tattatttcttcctcgccgtcgttttttcctttctttcattcagttatcttgatttcttcgatcatggcttccaattcgcaaaataattttcttgctggt |
52809605 |
T |
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| Q |
208 |
atgtatctataatcgctatttgttagcatacacattagacacaagtgtggtttagataggttattacattacataagtatc |
288 |
Q |
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| T |
52809604 |
atgtatctataatcgctatttgttagcatacacattagacacaagtgtggtttagataggttattacattacataagtatc |
52809524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 53284706 - 53284769
Alignment:
| Q |
159 |
gatttcttcgatcatggcttccaattcgcaaaataattttcttgctggtatgtatctataatcg |
222 |
Q |
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| T |
53284706 |
gatttcttcaatcatggcttccatttcgcaaaaggattttcctgctggtacgtatctataatcg |
53284769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 29311577 - 29311638
Alignment:
| Q |
161 |
tttcttcgatcatggcttccaattcgcaaaataattttcttgctggtatgtatctataatcg |
222 |
Q |
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| T |
29311577 |
tttcttctctcatggcttccaatttgcaaaaggattttcttgctggtatgtatctataatcg |
29311638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 11845161 - 11845098
Alignment:
| Q |
159 |
gatttcttcgatcatggcttccaattcgcaaaataattttcttgctggtatgtatctataatcg |
222 |
Q |
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| T |
11845161 |
gatttcttcaatcatggcttccaattcgcaaaaggattttcctgttggtacgtatctataatcg |
11845098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1454 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1454
Description:
Target: scaffold1454; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 904 - 831
Alignment:
| Q |
147 |
ttcagttatcttgatttcttcgatcatggcttccaattcgcaaaataattttcttgctggtatgtatctataat |
220 |
Q |
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| T |
904 |
ttcagctatctaggtttcttcgctcatggcttccaattctcaaaaggatattccttctggtatttatctataat |
831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 23705771 - 23705800
Alignment:
| Q |
255 |
tggtttagataggttattacattacataag |
284 |
Q |
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| T |
23705771 |
tggtttagataggttattacattacataag |
23705800 |
T |
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