View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_3 (Length: 613)
Name: NF1510_low_3
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Complemental strand, 43475723 - 43475138
Alignment:
| Q |
18 |
atctgccacctgttcgcgctactacttccgacacagttccagatctgtttcttgcaacagaaaaatgtcttaggaacgtctcctgcaatatggaacttcc |
117 |
Q |
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| T |
43475723 |
atctcccacctgttcgcgctactacttccgacacagttccagatctgtttcttgcaacagaaaaatgtcttaggaacgtctcttgcaatatggaacttcc |
43475624 |
T |
|
| Q |
118 |
agccatctttgagaccaaagcaaggttgttttcaccattaccgatccttctaaaaattgaattagagaaccaatttgtgcaggccggatgtgcagtgaca |
217 |
Q |
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| T |
43475623 |
agccatctttgagaccaaagcaaggttgttttcaccattaccgatccttctaaaaattgaattagagaaccaatttgttcaggtcggatgtgcagtgaca |
43475524 |
T |
|
| Q |
218 |
atcaactccggatcacgccaccaaattaaatcctattacttaactgccnnnnnnngcctttgataggtcaagtgactcaatgtatatatcaggcaattgt |
317 |
Q |
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| T |
43475523 |
atcaactccggatcacgccaccaaattaaatcctattacttaactgccaagaaaagcctttgataggtcaagtgactcaatgtatatatcaggcaattgt |
43475424 |
T |
|
| Q |
318 |
aacatggacaacaaaacatttcccaaaacctcatatacgtgctatatgaacatagcactacattagttctgtttgaggggcttagacaaaataaatgcta |
417 |
Q |
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| T |
43475423 |
aacatggacaacaaaacatttcccaaaacctcatatacgtgctatatgaacatagcactacattagttctgtttgaggggcttagacaaaataaatgcta |
43475324 |
T |
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| Q |
418 |
tggcttcccccaaaaatgtcaatttatgagtactttgttttataaaaccatgcatcatacctctttacaaagaagaatttttacaagatcattcaatcaa |
517 |
Q |
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| T |
43475323 |
tggcttcccccaaaaatgtcaatttatgagtactttgttttataaaaccatgcatcatacctctttacaaagaagaatttttacaagatcattcaatcaa |
43475224 |
T |
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| Q |
518 |
aatggcaacacacgccttccacacaaaataatttcacagtaaagtcataagttgctgaactttcacaattcaaattaacattcatc |
603 |
Q |
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| T |
43475223 |
aatggcaacacacgccttccacacaaaataatttcacagtaaagtcgtaagttgctgaactttcacaattcaaattaacattcatc |
43475138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 151 - 602
Target Start/End: Original strand, 43564711 - 43565155
Alignment:
| Q |
151 |
accattaccgatccttctaaaaattgaattagagaaccaatttgtgcaggccggatgtgcagtgacaatcaactccggatcacgccaccaaattaaatcc |
250 |
Q |
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| T |
43564711 |
accatttccgatcctactaacaattgaattagagaaccgatttgagtaggccggatgtgcagtgacaatcaactccagatcacgccaccaaattaaatcc |
43564810 |
T |
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| Q |
251 |
tattacttaactgccnnnnnnngcctttgataggtcaagtgactcaatgtatatatcaggcaattgtaacatggacaacaaaacatttcccaaaacctca |
350 |
Q |
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| T |
43564811 |
tattacttaactgctaaaagaagcctttgataggtcgagtgactca-tgtaaatatcaggcaattataatatggacaacaaaacatttcctaaaacctca |
43564909 |
T |
|
| Q |
351 |
tatacgtgctatatgaacatagcactacattagttctgtttgaggggcttagacaaaataaatgctatggcttcccccaaaaatgtcaatttatgagtac |
450 |
Q |
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| T |
43564910 |
tatacgtgctatatgaacatagcactgcattagatctgtttgactgccttagacaaacagag----atggcttcccc-aaaaatgtcaatttactagtac |
43565004 |
T |
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| Q |
451 |
tttgttttataaaaccatgcatcatacctctttacaaagaagaatttttacaagatcattcaatcaaaatggcaacacacgccttccacacaaaataatt |
550 |
Q |
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| T |
43565005 |
tta-ttttataaaacaatgcatcatacctctttacaaagaagaacttttacaagatcattcaatcaaaatagcaacacacgccttccacacaaaataatt |
43565103 |
T |
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| Q |
551 |
tcacagtaaagtcataagttgctgaactttcacaattcaaattaacattcat |
602 |
Q |
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| T |
43565104 |
tcaaagtaaagtcataagttgccgaactttcacaattcaaattaacattcat |
43565155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 8944190 - 8944031
Alignment:
| Q |
39 |
ctacttccgacacagttccagatctgtttcttgcaacagaaaaatgtcttaggaacgtctcctgcaatatggaacttccagcc-atctttgagaccaaag |
137 |
Q |
| |
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|||||||||| |||||| | || ||||||||||||| ||||| | | ||| ||||| |||| |||||||| ||||||||||| || | |||||| ||| |
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| T |
8944190 |
ctacttccgatacagtttcggacctgtttcttgcaatagaaataagccttgggaacttctcatgcaatattaaacttccagcccatttatgagactaaaa |
8944091 |
T |
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| Q |
138 |
caaggttgttttcaccattaccgatccttctaaaaattgaattagagaaccaatttgtgca |
198 |
Q |
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| T |
8944090 |
caaggttgttt-ctccattgccgatccttctaacacttgaattagagaaccaatttgtgca |
8944031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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