View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1510_low_33 (Length: 287)
Name: NF1510_low_33
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 23290063 - 23289787
Alignment:
| Q |
1 |
agaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23290063 |
agaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgaga |
23289964 |
T |
|
| Q |
101 |
tggctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23289963 |
tggctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaagcttcctattcctgcctc |
23289864 |
T |
|
| Q |
201 |
cgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgacta |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23289863 |
cgctgaagcaaaagacattcaaagggcagctggagaagccgctgaggctttcagaccagacaagactttaatgacta |
23289787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 23283747 - 23283464
Alignment:
| Q |
4 |
ggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatgg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
23283747 |
ggtgtgaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatgg |
23283648 |
T |
|
| Q |
104 |
ctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctccgc |
203 |
Q |
| |
|
|||| || ||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23283647 |
ctgcacgagcacacgacgttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgc |
23283548 |
T |
|
| Q |
204 |
tgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattga |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23283547 |
tgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattga |
23283464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 23391529 - 23391246
Alignment:
| Q |
4 |
ggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatgg |
103 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| || ||||||| |
|
|
| T |
23391529 |
ggtgtgaggaaaagaaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaaaatttggctaggcacttttccaactgcggagatgg |
23391430 |
T |
|
| Q |
104 |
ctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctccgc |
203 |
Q |
| |
|
| ||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||| || | |
|
|
| T |
23391429 |
cagcccgagcacatgatgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccac |
23391330 |
T |
|
| Q |
204 |
tgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattga |
287 |
Q |
| |
|
| | |||||||| || |||| ||| |||||| | ||||| ||||||||||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
23391329 |
tcaggcaaaagatatacaaaaggcggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattga |
23391246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 23587219 - 23586942
Alignment:
| Q |
1 |
agaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgaga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
23587219 |
agaggagtgaggaagaggaacttagataaatgggtttgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaactgccgaga |
23587120 |
T |
|
| Q |
101 |
tggctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctc |
200 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |||| || | ||||| | |
|
|
| T |
23587119 |
tggcagcccgtgcccacgatgttgctgcaatggcattgaggggccgctacgcttgtctcaactttgcagactcagcgtggcggctccccaaacctgcaac |
23587020 |
T |
|
| Q |
201 |
cgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaa |
278 |
Q |
| |
|
|| ||||||| || || |||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23587019 |
tactcaagcaaaggatatacaaaaggctgctacagaggccgccgaggctttcagaccagacaagactttattgactaa |
23586942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 23258077 - 23257791
Alignment:
| Q |
1 |
agaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||| ||||||||| ||||| |||| | |
|
|
| T |
23258077 |
agaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctggggacttttccaacacccgaaa |
23257978 |
T |
|
| Q |
101 |
tggctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctc |
200 |
Q |
| |
|
|||| ||||| || ||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| |||| | ||||||||||| || | |
|
|
| T |
23257977 |
tggcagcccgagcccacgatgttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaac |
23257878 |
T |
|
| Q |
201 |
cgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattga |
287 |
Q |
| |
|
| | |||||| ||||||| ||| ||||| ||||| ||||| ||||| |||||||||||||||||||||| ||| || ||||| |
|
|
| T |
23257877 |
ttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattga |
23257791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 23266632 - 23266346
Alignment:
| Q |
1 |
agaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgaga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
23266632 |
agaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaacacgaagactagaatttggctaggaacttttccaacagccgaga |
23266533 |
T |
|
| Q |
101 |
tggctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctc |
200 |
Q |
| |
|
|||| ||||| || ||||| ||||| || || ||||||||||| ||||||||||||||||| |||||||| |||| |||| ||||||||||||| || | |
|
|
| T |
23266532 |
tggcagcccgagcccacgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggcttcctattccagcaac |
23266433 |
T |
|
| Q |
201 |
cgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattga |
287 |
Q |
| |
|
| | |||||| ||||||| ||||||| || |||||||||| ||||| ||||||||||| ||| |||||| || | ||||||| |
|
|
| T |
23266432 |
ttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattga |
23266346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 23252101 - 23251827
Alignment:
| Q |
1 |
agaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||| || || | |||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
23252101 |
agaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctaggaacttttccaacagccgaga |
23252002 |
T |
|
| Q |
101 |
tggctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctc |
200 |
Q |
| |
|
|||| ||||| || ||||| ||||| || || ||||||||||||||||| ||||||||||| ||||||||||||| |||| | ||||||||||| || | |
|
|
| T |
23252001 |
tggcagcccgagcccacgatgttgccgcgatagcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaac |
23251902 |
T |
|
| Q |
201 |
cgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgac |
275 |
Q |
| |
|
| | |||||| ||||||| ||||||| || |||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
23251901 |
ttccgcgataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactttaatgac |
23251827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 23583332 - 23583059
Alignment:
| Q |
4 |
ggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatgg |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||| | || || |||||||||| ||||||||||||||||||| |||| || ||||||| |
|
|
| T |
23583332 |
ggtgtaaggaagaggaacttagataaatgggtttgtgaaatgaggaagcctaacaagaagactaagatttggctagggacttttccaactgcggagatgg |
23583233 |
T |
|
| Q |
104 |
ctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctccgc |
203 |
Q |
| |
|
| ||||||| ||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| || ||| |||| || | ||||| | | |
|
|
| T |
23583232 |
caacccgtgcccacgatgttgctgcaatggcattga-gggccgctacgcctgtctcaactttgcagactcagcatggcggctccccaaacctgcaactac |
23583134 |
T |
|
| Q |
204 |
tgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaa |
278 |
Q |
| |
|
| | ||||| || || |||| ||| |||||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
23583133 |
tcaggcaaaggatatacaaaaggctgctgcagaggccgccaaggctttcagaccagacaagactttattgactaa |
23583059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 23247689 - 23247411
Alignment:
| Q |
1 |
agaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||| || || | |||| |||||||||||| || |||||| ||||| | |||| |
|
|
| T |
23247689 |
agaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctgggaacttttccaacaccggaga |
23247590 |
T |
|
| Q |
101 |
tggctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctc |
200 |
Q |
| |
|
|||||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||| |||| | ||||||||||| || | |
|
|
| T |
23247589 |
tggctgcccgagcccacgatgttgctgcaatggcattgaggggccgctatgcctgtctcaatttctcagactcggtgtggcgccttcctattccagcaac |
23247490 |
T |
|
| Q |
201 |
cgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaac |
279 |
Q |
| |
|
| | | |||||| ||||||| ||||||| || |||| ||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
23247489 |
ttccgcaataaaagatattcaaaaggcagctacaaaagcggccgaagcttttagaccagacaatactttaatgactaac |
23247411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 4 - 276
Target Start/End: Complemental strand, 23634250 - 23633978
Alignment:
| Q |
4 |
ggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatgg |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
23634250 |
ggtgtgaggaggaggaacttagataaatgggtgtgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaacggccgagatgg |
23634151 |
T |
|
| Q |
104 |
ctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctccgc |
203 |
Q |
| |
|
| || || ||||| || || || ||| | ||||| || || ||| |||||||||| || ||||| ||||| || | | ||||||||||||||||| | | |
|
|
| T |
23634150 |
cagcacgagcacatgatgtcgcggcattggcattaagaggtcgcaacgcctgtcttaattttgctgactctgcctcgcggcttcctattcctgccactac |
23634051 |
T |
|
| Q |
204 |
tgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgact |
276 |
Q |
| |
|
|| ||| ||| || |||| | | ||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23634050 |
agagacaagagatatacaaaagacggctgcagaagctgccgaggctttcagaccagacaagactttaacgact |
23633978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 23507070 - 23506799
Alignment:
| Q |
4 |
ggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatgg |
103 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| || | || || || ||||| | |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
23507070 |
ggtgtgaggagtaggaacctagataaatgggtgtgtgaaataagacagcctaacaaaaagaccaagatttggctaggaacttttccaacagccgagatgg |
23506971 |
T |
|
| Q |
104 |
ctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctccgc |
203 |
Q |
| |
|
| || || || || || ||||| ||| | || |||| || || |||||||||||||||||||||||||||| | || ||| ||||||||||| | |
|
|
| T |
23506970 |
cagctcgggcccatgatgttgcggcactggcgttgaaaggtggcgacgcctgtctcaactttgcagactcggccttgacgctccctattcctgctacttg |
23506871 |
T |
|
| Q |
204 |
tgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgac |
275 |
Q |
| |
|
|| ||||||| || |||| | | ||||| ||||| || ||||| |||||||||| ||||||| ||||||| |
|
|
| T |
23506870 |
cgagacaaaagatatacaaaagacggctgctgaagctgctgaggcattcagaccaggcaagactgtaatgac |
23506799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 283
Target Start/End: Complemental strand, 23506763 - 23506629
Alignment:
| Q |
149 |
acgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||||||||||||| | || ||| ||| || |||| || ||||||||||| | ||||| |
|
|
| T |
23506763 |
acgcctgtctcaactttgcagactcggcctcgcggcttcctattcctgccactaaagagacaagagatatacaaaacgcggctgcagaagctactgaggc |
23506664 |
T |
|
| Q |
249 |
tttcagaccagacaagactttaatgactaacgaca |
283 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |
|
|
| T |
23506663 |
tttcagaccagacaagactttaacgactaatgaca |
23506629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 23594282 - 23594088
Alignment:
| Q |
4 |
ggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatgg |
103 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||||||||||||| || || |||| ||||| ||| |||||||| |||||| ||| || ||||||| |
|
|
| T |
23594282 |
ggtgtgaggagtaggaatttaggtaaatgggtgtgtgaaatgagggagcctaacaagatgactaagatatggctaggaacttttccaatggctgagatgg |
23594183 |
T |
|
| Q |
104 |
ctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaggcttcctattcctgcc |
198 |
Q |
| |
|
|| || || || || || || || | |||||||| || | ||||| |||||||||||||||||||| || ||| |||| | |||||||||| |
|
|
| T |
23594182 |
aagcacgagcccatgatgtcgcgacattggcattgagaggttgttacgcttgtctcaactttgcagactctgcatggcggctccttattcctgcc |
23594088 |
T |
|
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