View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_34 (Length: 269)
Name: NF1510_low_34
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 35313103 - 35312871
Alignment:
| Q |
20 |
agtaattcaatcaaacaaaaacacccttttcagtgctcatcaagaccataaaatccgtgtctggaaactaaccaacgaccaaacaaaatacactcatgta |
119 |
Q |
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| T |
35313103 |
agtaattcaatcaaacaaaaacacccttttcagtgctcatcaagaccgtaaaatccgtgtctggaaactaaccaacgaccaaacaaaatacactcatgta |
35313004 |
T |
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| Q |
120 |
gcaacacttccaacacttggtgaccgtgcatccaaaatcttaatcccaaaaaaccatgtccaaattcgtagacacaaaaaatgcacgtgggttcatcatg |
219 |
Q |
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| T |
35313003 |
gcaacacttccaacacttggtgaccgtgcatccaaaatcttaatcccaaaaaaccatgtccaaattcgtagacacaaaaaatgcacgtgggttcatcatg |
35312904 |
T |
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| Q |
220 |
tggacactgtttcttcacttgctctgtctaaag |
252 |
Q |
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| T |
35312903 |
tggacactgtttcttcacttgctctgtctaaag |
35312871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 44167097 - 44167024
Alignment:
| Q |
153 |
aaaatcttaatcccaaaaaaccatgtccaaattcgtagacacaaaaaatgcacgtgggttcatcatgtggacac |
226 |
Q |
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| T |
44167097 |
aaaatctttatcccgaaaaaccatgttaatattcgaaggcacaaaaaatgcacatgggtgcaccatgttgacac |
44167024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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