View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1510_low_4 (Length: 563)

Name: NF1510_low_4
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1510_low_4
NF1510_low_4
[»] chr7 (17 HSPs)
chr7 (91-369)||(5729921-5730199)
chr7 (413-529)||(5728353-5728469)
chr7 (529-562)||(28890577-28890610)
chr7 (530-563)||(42618305-42618338)
chr7 (530-563)||(46204420-46204453)
chr7 (530-562)||(41899236-41899268)
chr7 (529-563)||(32934346-32934380)
chr7 (529-563)||(32934742-32934776)
chr7 (380-417)||(5728550-5728587)
chr7 (534-563)||(25453131-25453160)
chr7 (533-562)||(32068098-32068127)
chr7 (534-563)||(32068490-32068519)
chr7 (534-563)||(42617914-42617943)
chr7 (534-563)||(43266269-43266298)
chr7 (534-563)||(43266660-43266689)
chr7 (524-561)||(46205705-46205742)
chr7 (531-563)||(10600343-10600375)
[»] chr4 (16 HSPs)
chr4 (413-530)||(54390188-54390305)
chr4 (525-563)||(3032576-3032614)
chr4 (530-563)||(11523948-11523981)
chr4 (530-563)||(39701303-39701336)
chr4 (524-563)||(27069304-27069343)
chr4 (524-563)||(27149389-27149428)
chr4 (524-563)||(52573622-52573661)
chr4 (529-563)||(54858558-54858592)
chr4 (529-563)||(54858954-54858988)
chr4 (534-563)||(10407892-10407921)
chr4 (534-563)||(16605605-16605634)
chr4 (529-562)||(22717937-22717970)
chr4 (534-563)||(45463076-45463105)
chr4 (534-562)||(27891587-27891615)
chr4 (531-563)||(45463467-45463499)
chr4 (534-562)||(51859801-51859829)
[»] chr6 (7 HSPs)
chr6 (524-563)||(7905637-7905676)
chr6 (530-563)||(7160803-7160836)
chr6 (530-563)||(22502773-22502806)
chr6 (534-563)||(6517506-6517535)
chr6 (534-563)||(7905246-7905275)
chr6 (531-563)||(21836032-21836064)
chr6 (519-563)||(22503168-22503212)
[»] chr3 (17 HSPs)
chr3 (529-563)||(3596107-3596141)
chr3 (521-563)||(29118932-29118974)
chr3 (530-563)||(33156390-33156423)
chr3 (530-563)||(41421971-41422004)
chr3 (529-563)||(32306422-32306456)
chr3 (529-563)||(37778667-37778701)
chr3 (529-563)||(40788814-40788848)
chr3 (534-563)||(10294570-10294599)
chr3 (534-563)||(13948783-13948812)
chr3 (534-563)||(13949089-13949118)
chr3 (534-563)||(29686334-29686363)
chr3 (534-563)||(32306818-32306847)
chr3 (534-563)||(33506181-33506210)
chr3 (529-562)||(47551491-47551524)
chr3 (530-563)||(52032137-52032170)
chr3 (529-562)||(52032534-52032567)
chr3 (534-562)||(11910702-11910730)
[»] scaffold0388 (1 HSPs)
scaffold0388 (530-563)||(12633-12666)
[»] chr8 (14 HSPs)
chr8 (530-563)||(6471689-6471722)
chr8 (530-563)||(10445729-10445762)
chr8 (529-562)||(38003801-38003834)
chr8 (531-563)||(8997856-8997888)
chr8 (529-563)||(37542222-37542256)
chr8 (529-563)||(42945508-42945542)
chr8 (534-563)||(234134-234163)
chr8 (534-563)||(710545-710574)
chr8 (534-563)||(747757-747786)
chr8 (534-563)||(871652-871681)
chr8 (534-563)||(6472409-6472438)
chr8 (534-563)||(8998083-8998112)
chr8 (534-563)||(44664902-44664931)
chr8 (534-562)||(21432696-21432724)
[»] chr2 (9 HSPs)
chr2 (524-561)||(41587228-41587265)
chr2 (530-561)||(8342186-8342217)
chr2 (529-563)||(8342573-8342607)
chr2 (529-563)||(8710862-8710896)
chr2 (529-563)||(15604337-15604371)
chr2 (529-563)||(15604733-15604767)
chr2 (530-563)||(6573046-6573079)
chr2 (534-563)||(28226138-28226167)
chr2 (534-562)||(11830367-11830395)
[»] chr5 (3 HSPs)
chr5 (529-563)||(33871732-33871766)
chr5 (534-563)||(17544442-17544471)
chr5 (534-563)||(20153309-20153338)
[»] chr1 (16 HSPs)
chr1 (529-563)||(8898515-8898549)
chr1 (529-563)||(25885387-25885421)
chr1 (528-562)||(31058452-31058486)
chr1 (530-563)||(7371289-7371322)
chr1 (534-563)||(17188957-17188986)
chr1 (534-563)||(30326499-30326528)
chr1 (534-563)||(31050953-31050982)
chr1 (534-563)||(37929421-37929450)
chr1 (534-563)||(40714447-40714476)
chr1 (534-563)||(40714837-40714866)
chr1 (534-563)||(44523532-44523561)
chr1 (534-563)||(45750236-45750265)
chr1 (534-563)||(49955350-49955379)
chr1 (534-563)||(49955741-49955770)
chr1 (534-562)||(17189246-17189274)
chr1 (523-563)||(45749834-45749874)
[»] scaffold0771 (2 HSPs)
scaffold0771 (534-563)||(923-952)
scaffold0771 (534-563)||(1229-1258)
[»] scaffold0006 (2 HSPs)
scaffold0006 (534-563)||(222183-222212)
scaffold0006 (531-563)||(221791-221823)
[»] scaffold0599 (1 HSPs)
scaffold0599 (534-562)||(2396-2424)
[»] scaffold0328 (1 HSPs)
scaffold0328 (530-562)||(11139-11171)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-141; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 91 - 369
Target Start/End: Complemental strand, 5730199 - 5729921
Alignment:
Q  91 tatattgagttatacatttcttgcttgcttggttagcctgtgcagatgcaaggtatgatgatatgcagtgactttgttcttctcatttatcagtcaaact 190  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5730199 tatattgagttatacttttcctgcttgcttggttagcctgtgcagatggaaggtatgatgatatgcactgactttgttcttctcatttatcagtcaaact 5730100  T
Q  191 ccaattctttatttgcagtagcttttgatgtttaatagtggattaatttaattttcattttttatcacctataaacttgagaaaataaactacaaccaaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5730099 ccaattctttatttgcagtagcttttgatgtttaatagtggattaatttaattttcattttttatcacctataaacttgagaaaataaactgcaaccaaa 5730000  T
Q  291 aagacaattatgtcatttcttcattatttaacattgtaacacatcaacaagttgaaggttatttttgtaaagtaaaatt 369  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5729999 aagacaattatgttatttcttcattatttaacattgtaacacatcaacaagttgaaggttatttttgtaaagtaaaatt 5729921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 413 - 529
Target Start/End: Complemental strand, 5728469 - 5728353
Alignment:
Q  413 ttttcacggcctataaggtttactatgaccttaacctgcagcaattgatccaaaagatctgaatacacttgaagataacatatttaatttgcatgtatag 512  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5728469 ttttcacggcctttaaggtttactatgaccttaacctgcagcaattgatccaaaagatctgaatacacttgaagataacatatttaatttgtatgtatag 5728370  T
Q  513 tgtgccatattaaaaga 529  Q
    |||||||||||||||||    
T  5728369 tgtgccatattaaaaga 5728353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 529 - 562
Target Start/End: Original strand, 28890577 - 28890610
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattag 562  Q
    ||||||||||||||||||||||||||||||||||    
T  28890577 aaggtttaatgatgtgtttcgtccttgcaattag 28890610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Complemental strand, 42618338 - 42618305
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  42618338 aggtttaatgatgtgtttcgtccttgcaattagg 42618305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 46204420 - 46204453
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  46204420 aggtttaatgatgtgtttcgtccttgcaattagg 46204453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 562
Target Start/End: Original strand, 41899236 - 41899268
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||||||||||    
T  41899236 aggtttaatgatgtgtttcgtccttgcaattag 41899268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 32934346 - 32934380
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||||||||||| ||||||||||||||    
T  32934346 aaggtttaatgatgtgtttcatccttgcaattagg 32934380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 32934776 - 32934742
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  32934776 aaggcttaatgatgtgtttcgtccttgcaattagg 32934742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 5728587 - 5728550
Alignment:
Q  380 ttaaattactagtactacgttataagaccttcgttttc 417  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  5728587 ttaaattactagtactacgtcataagaccttctttttc 5728550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 25453131 - 25453160
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  25453131 ttaatgatgtgtttcgtccttgcaattagg 25453160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 562
Target Start/End: Original strand, 32068098 - 32068127
Alignment:
Q  533 tttaatgatgtgtttcgtccttgcaattag 562  Q
    ||||||||||||||||||||||||||||||    
T  32068098 tttaatgatgtgtttcgtccttgcaattag 32068127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 32068519 - 32068490
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  32068519 ttaatgatgtgtttcgtccttgcaattagg 32068490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 42617914 - 42617943
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  42617914 ttaatgatgtgtttcgtccttgcaattagg 42617943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 43266269 - 43266298
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  43266269 ttaatgatgtgtttcgtccttgcaattagg 43266298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 43266689 - 43266660
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  43266689 ttaatgatgtgtttcgtccttgcaattagg 43266660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 561
Target Start/End: Complemental strand, 46205742 - 46205705
Alignment:
Q  524 aaaagaaggtttaatgatgtgtttcgtccttgcaatta 561  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  46205742 aaaataaggtttaatgatgtgtttcgttcttgcaatta 46205705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 531 - 563
Target Start/End: Complemental strand, 10600375 - 10600343
Alignment:
Q  531 ggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||| |||||||||||    
T  10600375 ggtttaatgatgtgtttcgtcattgcaattagg 10600343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 413 - 530
Target Start/End: Original strand, 54390188 - 54390305
Alignment:
Q  413 ttttcacggcctataaggtttactatgaccttaacctgcagcaattgatccaaaagatctgaatacacttgaagataacatatttaatttgcatgtatag 512  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54390188 ttttcacggcctttaaggtttactatgaccttaacctgcagcaattgatccaaaagatctgaatacacttgaagataacatatttaatttgtatgtatag 54390287  T
Q  513 tgtgccatattaaaagaa 530  Q
    ||||||||||||||||||    
T  54390288 tgtgccatattaaaagaa 54390305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 3032576 - 3032614
Alignment:
Q  525 aaagaaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  3032576 aaagaaggcttaatgatgtgtttcgtccttgcaattagg 3032614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 11523948 - 11523981
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  11523948 aggtttaatgatgtgtttcgtccttgcaattagg 11523981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Complemental strand, 39701336 - 39701303
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  39701336 aggtttaatgatgtgtttcgtccttgcaattagg 39701303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 563
Target Start/End: Complemental strand, 27069343 - 27069304
Alignment:
Q  524 aaaagaaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  27069343 aaaataaggcttaatgatgtgtttcgtccttgcaattagg 27069304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 563
Target Start/End: Complemental strand, 27149428 - 27149389
Alignment:
Q  524 aaaagaaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  27149428 aaaataaggcttaatgatgtgtttcgtccttgcaattagg 27149389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 563
Target Start/End: Complemental strand, 52573661 - 52573622
Alignment:
Q  524 aaaagaaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  52573661 aaaaaaaggcttaatgatgtgtttcgtccttgcaattagg 52573622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 54858558 - 54858592
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  54858558 aaggcttaatgatgtgtttcgtccttgcaattagg 54858592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 54858988 - 54858954
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  54858988 aaggcttaatgatgtgtttcgtccttgcaattagg 54858954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 10407892 - 10407921
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  10407892 ttaatgatgtgtttcgtccttgcaattagg 10407921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 16605605 - 16605634
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  16605605 ttaatgatgtgtttcgtccttgcaattagg 16605634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 562
Target Start/End: Original strand, 22717937 - 22717970
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||| |||||||    
T  22717937 aaggtttaatgatgtgtttcgtccttacaattag 22717970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 45463076 - 45463105
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  45463076 ttaatgatgtgtttcgtccttgcaattagg 45463105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Original strand, 27891587 - 27891615
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||||||    
T  27891587 ttaatgatgtgtttcgtccttgcaattag 27891615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 531 - 563
Target Start/End: Complemental strand, 45463499 - 45463467
Alignment:
Q  531 ggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||| |||||||||||||||||||||    
T  45463499 ggtttaatgatatgtttcgtccttgcaattagg 45463467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Complemental strand, 51859829 - 51859801
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||||||    
T  51859829 ttaatgatgtgtttcgtccttgcaattag 51859801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 524 - 563
Target Start/End: Complemental strand, 7905676 - 7905637
Alignment:
Q  524 aaaagaaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  7905676 aaaaaaaggtttaatgatgtgtttcgtccttgcaattagg 7905637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 7160803 - 7160836
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  7160803 aggtttaatgatgtgtttcgtccttgcaattagg 7160836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 22502773 - 22502806
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  22502773 aggtttaatgatgtgtttcgtccttgcaattagg 22502806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 6517506 - 6517535
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  6517506 ttaatgatgtgtttcgtccttgcaattagg 6517535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 7905246 - 7905275
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  7905246 ttaatgatgtgtttcgtccttgcaattagg 7905275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 531 - 563
Target Start/End: Original strand, 21836032 - 21836064
Alignment:
Q  531 ggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||||||||||| ||||||||||||    
T  21836032 ggtttaatgatgtgtttcgttcttgcaattagg 21836064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 22503212 - 22503168
Alignment:
Q  519 atattaaaagaaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| |||| |||| ||||| ||||||||||||||||||||||||    
T  22503212 atataaaaataaggcttaataatgtgtttcgtccttgcaattagg 22503168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 3596107 - 3596141
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||||||||||||||||||||||||||    
T  3596107 aaggtttaatgatgtgtttcgtccttgcaattagg 3596141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 563
Target Start/End: Complemental strand, 29118974 - 29118932
Alignment:
Q  521 attaaaagaaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  29118974 attaaaagaaggcataatgatgtgtttcgtccttgcaattagg 29118932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Complemental strand, 33156423 - 33156390
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  33156423 aggtttaatgatgtgtttcgtccttgcaattagg 33156390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 41421971 - 41422004
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  41421971 aggtttaatgatgtgtttcgtccttgcaattagg 41422004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 32306422 - 32306456
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  32306422 aaggcttaatgatgtgtttcgtccttgcaattagg 32306456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 37778701 - 37778667
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  37778701 aaggcttaatgatgtgtttcgtccttgcaattagg 37778667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 40788848 - 40788814
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  40788848 aaggcttaatgatgtgtttcgtccttgcaattagg 40788814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 10294570 - 10294599
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  10294570 ttaatgatgtgtttcgtccttgcaattagg 10294599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 13948783 - 13948812
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  13948783 ttaatgatgtgtttcgtccttgcaattagg 13948812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 13949118 - 13949089
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  13949118 ttaatgatgtgtttcgtccttgcaattagg 13949089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 29686363 - 29686334
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  29686363 ttaatgatgtgtttcgtccttgcaattagg 29686334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 32306847 - 32306818
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  32306847 ttaatgatgtgtttcgtccttgcaattagg 32306818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 33506181 - 33506210
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  33506181 ttaatgatgtgtttcgtccttgcaattagg 33506210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 562
Target Start/End: Original strand, 47551491 - 47551524
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattag 562  Q
    |||| |||||||||||||||||||||||||||||    
T  47551491 aaggcttaatgatgtgtttcgtccttgcaattag 47551524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 52032137 - 52032170
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||||||||| |||||||||||||||    
T  52032137 aggtttaatgatgtgttttgtccttgcaattagg 52032170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 562
Target Start/End: Complemental strand, 52032567 - 52032534
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattag 562  Q
    |||| |||||||||||||||||||||||||||||    
T  52032567 aaggcttaatgatgtgtttcgtccttgcaattag 52032534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Original strand, 11910702 - 11910730
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||||||    
T  11910702 ttaatgatgtgtttcgtccttgcaattag 11910730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Complemental strand, 12666 - 12633
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  12666 aggtttaatgatgtgtttcgtccttgcaattagg 12633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 6471689 - 6471722
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  6471689 aggtttaatgatgtgtttcgtccttgcaattagg 6471722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 563
Target Start/End: Complemental strand, 10445762 - 10445729
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||||||    
T  10445762 aggtttaatgatgtgtttcgtccttgcaattagg 10445729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 529 - 562
Target Start/End: Complemental strand, 38003834 - 38003801
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattag 562  Q
    ||||||||||||||||||||||||||||||||||    
T  38003834 aaggtttaatgatgtgtttcgtccttgcaattag 38003801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 531 - 563
Target Start/End: Original strand, 8997856 - 8997888
Alignment:
Q  531 ggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||||||||||||||||||||||||    
T  8997856 ggtttaatgatgtgtttcgtccttgcaattagg 8997888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 37542222 - 37542256
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||| |||||||||||    
T  37542222 aaggtttaatgatgtgtttcgtctttgcaattagg 37542256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 42945542 - 42945508
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||||||||||||| ||||||||||||    
T  42945542 aaggtttaatgatgtgtttcgttcttgcaattagg 42945508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 234163 - 234134
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  234163 ttaatgatgtgtttcgtccttgcaattagg 234134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 710574 - 710545
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  710574 ttaatgatgtgtttcgtccttgcaattagg 710545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 747786 - 747757
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  747786 ttaatgatgtgtttcgtccttgcaattagg 747757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 871681 - 871652
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  871681 ttaatgatgtgtttcgtccttgcaattagg 871652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 6472438 - 6472409
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  6472438 ttaatgatgtgtttcgtccttgcaattagg 6472409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 8998112 - 8998083
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  8998112 ttaatgatgtgtttcgtccttgcaattagg 8998083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 44664931 - 44664902
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  44664931 ttaatgatgtgtttcgtccttgcaattagg 44664902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Original strand, 21432696 - 21432724
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||||||    
T  21432696 ttaatgatgtgtttcgtccttgcaattag 21432724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 524 - 561
Target Start/End: Original strand, 41587228 - 41587265
Alignment:
Q  524 aaaagaaggtttaatgatgtgtttcgtccttgcaatta 561  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  41587228 aaaagaaggcttaatgatgtgtttcgtccttgcaatta 41587265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 561
Target Start/End: Original strand, 8342186 - 8342217
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaatta 561  Q
    ||||||||||||||||||||||||||||||||    
T  8342186 aggtttaatgatgtgtttcgtccttgcaatta 8342217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 8342607 - 8342573
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||||||||||||||||| ||||||||    
T  8342607 aaggtttaatgatgtgtttcgtccttacaattagg 8342573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 8710896 - 8710862
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  8710896 aaggcttaatgatgtgtttcgtccttgcaattagg 8710862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 15604337 - 15604371
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  15604337 aaggcttaatgatgtgtttcgtccttgcaattagg 15604371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 15604767 - 15604733
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||| |||||||||||||||    
T  15604767 aaggtttaatgatgtgttttgtccttgcaattagg 15604733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 6573046 - 6573079
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||| ||||||||||    
T  6573046 aggtttaatgatgtgtttcgtccctgcaattagg 6573079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 28226167 - 28226138
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  28226167 ttaatgatgtgtttcgtccttgcaattagg 28226138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Original strand, 11830367 - 11830395
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||||||    
T  11830367 ttaatgatgtgtttcgtccttgcaattag 11830395  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 33871766 - 33871732
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  33871766 aaggcttaatgatgtgtttcgtccttgcaattagg 33871732  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 17544471 - 17544442
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  17544471 ttaatgatgtgtttcgtccttgcaattagg 17544442  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 20153338 - 20153309
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  20153338 ttaatgatgtgtttcgtccttgcaattagg 20153309  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 8898515 - 8898549
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  8898515 aaggcttaatgatgtgtttcgtccttgcaattagg 8898549  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 25885421 - 25885387
Alignment:
Q  529 aaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||| ||||||||||||||||||||||||||||||    
T  25885421 aaggcttaatgatgtgtttcgtccttgcaattagg 25885387  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 528 - 562
Target Start/End: Complemental strand, 31058486 - 31058452
Alignment:
Q  528 gaaggtttaatgatgtgtttcgtccttgcaattag 562  Q
    ||||| |||||||||||||||||||||||||||||    
T  31058486 gaaggcttaatgatgtgtttcgtccttgcaattag 31058452  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 7371289 - 7371322
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||| |||||||||||||||||||||    
T  7371289 aggtttaatgatatgtttcgtccttgcaattagg 7371322  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 17188957 - 17188986
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  17188957 ttaatgatgtgtttcgtccttgcaattagg 17188986  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 30326499 - 30326528
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  30326499 ttaatgatgtgtttcgtccttgcaattagg 30326528  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 31050953 - 31050982
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  31050953 ttaatgatgtgtttcgtccttgcaattagg 31050982  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 37929421 - 37929450
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  37929421 ttaatgatgtgtttcgtccttgcaattagg 37929450  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 40714447 - 40714476
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  40714447 ttaatgatgtgtttcgtccttgcaattagg 40714476  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 40714866 - 40714837
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  40714866 ttaatgatgtgtttcgtccttgcaattagg 40714837  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 44523561 - 44523532
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  44523561 ttaatgatgtgtttcgtccttgcaattagg 44523532  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 45750265 - 45750236
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  45750265 ttaatgatgtgtttcgtccttgcaattagg 45750236  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 49955350 - 49955379
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  49955350 ttaatgatgtgtttcgtccttgcaattagg 49955379  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 49955770 - 49955741
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  49955770 ttaatgatgtgtttcgtccttgcaattagg 49955741  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Complemental strand, 17189274 - 17189246
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||||||    
T  17189274 ttaatgatgtgtttcgtccttgcaattag 17189246  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 563
Target Start/End: Original strand, 45749834 - 45749874
Alignment:
Q  523 taaaagaaggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||| |||| ||||||||||||||| ||||||||||||||    
T  45749834 taaaaaaaggcttaatgatgtgtttcatccttgcaattagg 45749874  T

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Target: scaffold0771 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 923 - 952
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  923 ttaatgatgtgtttcgtccttgcaattagg 952  T

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Target: scaffold0771; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 1258 - 1229
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  1258 ttaatgatgtgtttcgtccttgcaattagg 1229  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 222212 - 222183
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattagg 563  Q
    ||||||||||||||||||||||||||||||    
T  222212 ttaatgatgtgtttcgtccttgcaattagg 222183  T

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Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 531 - 563
Target Start/End: Original strand, 221791 - 221823
Alignment:
Q  531 ggtttaatgatgtgtttcgtccttgcaattagg 563  Q
    |||||||||||||||||||| ||||||||||||    
T  221791 ggtttaatgatgtgtttcgttcttgcaattagg 221823  T

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Target: scaffold0599 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Original strand, 2396 - 2424
Alignment:
Q  534 ttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||||||||||    
T  2396 ttaatgatgtgtttcgtccttgcaattag 2424  T

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Target: scaffold0328 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 530 - 562
Target Start/End: Original strand, 11139 - 11171
Alignment:
Q  530 aggtttaatgatgtgtttcgtccttgcaattag 562  Q
    |||||||||||||||||||||| ||||||||||    
T  11139 aggtttaatgatgtgtttcgtcgttgcaattag 11171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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