View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1510_low_42 (Length: 231)

Name: NF1510_low_42
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1510_low_42
NF1510_low_42
[»] chr6 (13 HSPs)
chr6 (9-231)||(23282774-23282996)
chr6 (76-231)||(23289184-23289340)
chr6 (9-77)||(7847277-7847345)
chr6 (40-77)||(7772176-7772213)
chr6 (40-79)||(2090656-2090695)
chr6 (40-77)||(402621-402658)
chr6 (40-77)||(13901641-13901678)
chr6 (40-77)||(15498629-15498666)
chr6 (40-77)||(23604460-23604497)
chr6 (40-77)||(25045643-25045680)
chr6 (40-77)||(34915543-34915580)
chr6 (44-80)||(2364406-2364442)
chr6 (42-74)||(2665727-2665759)
[»] scaffold0161 (1 HSPs)
scaffold0161 (6-78)||(3437-3509)
[»] chr1 (15 HSPs)
chr1 (6-77)||(25509209-25509280)
chr1 (40-77)||(18237094-18237131)
chr1 (9-77)||(1427199-1427268)
chr1 (10-78)||(26768385-26768453)
chr1 (9-77)||(50007975-50008043)
chr1 (43-77)||(29437857-29437891)
chr1 (40-78)||(33336800-33336838)
chr1 (45-78)||(6129917-6129950)
chr1 (40-77)||(7763749-7763786)
chr1 (40-77)||(27037269-27037306)
chr1 (40-77)||(42276161-42276198)
chr1 (40-77)||(43456621-43456658)
chr1 (40-73)||(45285810-45285843)
chr1 (40-77)||(47754017-47754054)
chr1 (45-77)||(45943978-45944010)
[»] chr8 (19 HSPs)
chr8 (40-85)||(2152240-2152285)
chr8 (40-77)||(5774048-5774085)
chr8 (40-78)||(18641380-18641418)
chr8 (40-78)||(31619248-31619286)
chr8 (43-77)||(35179600-35179634)
chr8 (40-78)||(36177103-36177141)
chr8 (40-78)||(37023284-37023322)
chr8 (44-77)||(2151980-2152013)
chr8 (40-77)||(5162304-5162341)
chr8 (42-79)||(6050557-6050594)
chr8 (40-77)||(8566202-8566239)
chr8 (40-77)||(12802611-12802648)
chr8 (40-77)||(17069844-17069881)
chr8 (40-77)||(17578392-17578429)
chr8 (44-77)||(23719281-23719314)
chr8 (40-77)||(33980465-33980502)
chr8 (44-81)||(35504315-35504352)
chr8 (40-77)||(43654203-43654240)
chr8 (40-77)||(44748463-44748500)
[»] chr7 (12 HSPs)
chr7 (40-77)||(12930318-12930355)
chr7 (40-77)||(18751982-18752019)
chr7 (9-77)||(46148431-46148500)
chr7 (9-77)||(25247659-25247727)
chr7 (43-77)||(7607635-7607669)
chr7 (43-77)||(9682602-9682636)
chr7 (6-77)||(32118129-32118200)
chr7 (6-77)||(33381539-33381610)
chr7 (40-77)||(2290016-2290053)
chr7 (40-77)||(34012517-34012554)
chr7 (40-77)||(34979077-34979114)
chr7 (44-77)||(35888574-35888607)
[»] chr3 (17 HSPs)
chr3 (40-77)||(8503505-8503542)
chr3 (43-83)||(36584704-36584744)
chr3 (43-78)||(4564236-4564271)
chr3 (43-78)||(20621687-20621722)
chr3 (9-77)||(49383344-49383412)
chr3 (40-78)||(47008502-47008540)
chr3 (40-77)||(1450242-1450279)
chr3 (40-77)||(4759351-4759388)
chr3 (40-77)||(8321925-8321962)
chr3 (40-77)||(24087335-24087372)
chr3 (40-77)||(26221288-26221325)
chr3 (40-77)||(30819878-30819915)
chr3 (40-77)||(35572454-35572491)
chr3 (40-77)||(41392880-41392917)
chr3 (40-77)||(46845492-46845529)
chr3 (40-77)||(49383833-49383870)
chr3 (40-84)||(14428603-14428647)
[»] chr2 (12 HSPs)
chr2 (40-77)||(11865289-11865326)
chr2 (40-77)||(26334845-26334882)
chr2 (43-78)||(40789091-40789126)
chr2 (40-78)||(8912874-8912912)
chr2 (43-77)||(13598522-13598556)
chr2 (40-82)||(16108475-16108517)
chr2 (40-77)||(2060316-2060353)
chr2 (44-77)||(6028606-6028639)
chr2 (40-77)||(7116299-7116336)
chr2 (40-77)||(26322293-26322330)
chr2 (40-77)||(28566151-28566188)
chr2 (40-77)||(38121511-38121548)
[»] chr4 (20 HSPs)
chr4 (8-77)||(20455149-20455218)
chr4 (40-84)||(49373693-49373737)
chr4 (43-77)||(13548980-13549014)
chr4 (40-78)||(15241479-15241517)
chr4 (43-77)||(30050087-30050121)
chr4 (40-78)||(53564356-53564394)
chr4 (40-77)||(4415965-4416002)
chr4 (40-77)||(25124246-25124283)
chr4 (40-77)||(28501386-28501423)
chr4 (40-77)||(29520164-29520201)
chr4 (40-77)||(31937076-31937113)
chr4 (40-77)||(46949992-46950029)
chr4 (40-77)||(49793091-49793128)
chr4 (41-78)||(55563128-55563165)
chr4 (40-77)||(56432518-56432555)
chr4 (40-72)||(4549889-4549921)
chr4 (41-77)||(6462691-6462727)
chr4 (43-79)||(23623899-23623935)
chr4 (41-77)||(32899219-32899255)
chr4 (41-77)||(37639888-37639924)
[»] scaffold0674 (1 HSPs)
scaffold0674 (40-78)||(5150-5188)
[»] scaffold0604 (1 HSPs)
scaffold0604 (6-77)||(3748-3819)
[»] scaffold0549 (1 HSPs)
scaffold0549 (40-78)||(10182-10220)
[»] scaffold0240 (1 HSPs)
scaffold0240 (40-78)||(18496-18534)
[»] scaffold0107 (1 HSPs)
scaffold0107 (40-78)||(48653-48691)
[»] chr5 (10 HSPs)
chr5 (40-78)||(23286474-23286512)
chr5 (43-77)||(24857556-24857590)
chr5 (43-77)||(39971014-39971048)
chr5 (40-86)||(40004409-40004455)
chr5 (40-78)||(43060411-43060449)
chr5 (40-77)||(3028013-3028050)
chr5 (40-77)||(8949812-8949849)
chr5 (40-77)||(15190815-15190852)
chr5 (41-78)||(19571940-19571977)
chr5 (40-77)||(23260138-23260175)
[»] scaffold0457 (1 HSPs)
scaffold0457 (40-77)||(4663-4700)
[»] scaffold0074 (1 HSPs)
scaffold0074 (42-74)||(55930-55962)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 23282774 - 23282996
Alignment:
Q  9 caaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagtaaataaaagagataagatgcactttattcgtg 108  Q
    ||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  23282774 caaaggggtcttataataagagacaaaaaaattctcaaaagggtcttatatttagggacggaggtagtaaataaaagagataagatgcactttatgcctg 23282873  T
Q  109 attcgtgattatattcacatataagctacaaattaaaaatccttttgaaatccaacttgttgtatatagatatattgcagttgtgtcatttaaacacaat 208  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23282874 attagtgattatattcacatataagctacaaattaaaaatccttttgaaatccaacttgttgtatatagatatattgcagttgtgtaatttaaacacaat 23282973  T
Q  209 ttctgacaccacgtatcaacacc 231  Q
    |||||||||||||| ||||||||    
T  23282974 ttctgacaccacgtctcaacacc 23282996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 23289184 - 23289340
Alignment:
Q  76 taaataaaagagataagatgcactttattcgtgattcgtgattatattcacatataagctacaaattaaaaatccttttgaaa-tccaacttgttgtata 174  Q
    |||||||||||  ||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||    
T  23289184 taaataaaagaagtaagatgcactttatgcctgattagtgattctattcacatataagctacaaattaaaaatccttttgaaattccaacttatagtata 23289283  T
Q  175 tagatatattgcagttgtgtcatttaaacacaatttctgacaccacgtatcaacacc 231  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  23289284 tagatatattgcatttgtgtaatttaaacacaatttctgacaccacgtctcaacacc 23289340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 7847277 - 7847345
Alignment:
Q  9 caaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||| ||||||||||||||       |||||||||| |||||||||||||||||||||||||||    
T  7847277 caaaggggtattataataagagacaaaaaaattctcaaaagggtcttatatttagggacggaggtagta 7847345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 7772213 - 7772176
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  7772213 ttctcaaaagagtcttataattagggacggaggtagta 7772176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 2090695 - 2090656
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaaa 79  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  2090695 ttctcaaaagggtcttataattagggacggaggtagtaaa 2090656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 402621 - 402658
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  402621 ttctcaaaagggtcttataattagggacggaggtagta 402658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 13901678 - 13901641
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  13901678 ttctcaaaagggtcttataattagggacggaggtagta 13901641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 15498666 - 15498629
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  15498666 ttctcaaaagggtcttataattagggacggaggtagta 15498629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 23604497 - 23604460
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  23604497 ttctcaaaagggtcttataattagggacggaggtagta 23604460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 25045643 - 25045680
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  25045643 ttctcaaaagggtcttataattagggacggaggtagta 25045680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 34915543 - 34915580
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  34915543 ttctcaaaagggtcttataattagggacggaggtagta 34915580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 2364442 - 2364406
Alignment:
Q  44 caaaagagtcttatatttagggacggaggtagtaaat 80  Q
    ||||||| || ||||||||||||||||||||||||||    
T  2364442 caaaagactcctatatttagggacggaggtagtaaat 2364406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 2665727 - 2665759
Alignment:
Q  42 ctcaaaagagtcttatatttagggacggaggta 74  Q
    ||||||| |||||||||||||||||||||||||    
T  2665727 ctcaaaaaagtcttatatttagggacggaggta 2665759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 3509 - 3437
Alignment:
Q  6 tagcaaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    ||||||||||||||||||| ||| |||       |||||||||| |||||||| |||||||||||||||||||    
T  3509 tagcaaaggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggaggtagtaa 3437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 25509280 - 25509209
Alignment:
Q  6 tagcaaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||| |||       |||||||||| |||||||| ||||||||||||||||||    
T  25509280 tagcaaaggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggaggtagta 25509209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 18237131 - 18237094
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  18237131 ttctcaaaagagtcttataattagggacggaggtagta 18237094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 1427268 - 1427199
Alignment:
Q  9 caaaggggtcttataataagagacnnnnnnn-ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||||||||        |||||||||| |||||||||||| ||||||||||||||    
T  1427268 caaaggggtcttataataagagacaaaaaaaattctcaaaagggtcttatatttaaggacggaggtagta 1427199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 26768453 - 26768385
Alignment:
Q  10 aaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||| |||||||| |||||||       |||||||||| |||||||||||||||||| |||||||||    
T  26768453 aaagggatcttataaaaagagacaaaaaaattctcaaaagggtcttatatttagggacgaaggtagtaa 26768385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 50008043 - 50007975
Alignment:
Q  9 caaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| |||||||       ||||||||||||||||||| |||||||| |||| ||||    
T  50008043 caaaggggtcttataaaaagagacaaaaaaattctcaaaagagtcttataattagggacagagggagta 50007975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 29437857 - 29437891
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  29437857 tcaaaagagtcttataattagggacggaggtagta 29437891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 33336838 - 33336800
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  33336838 ttctcaaaagaatcttatatttagagacggaggtagtaa 33336800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 6129950 - 6129917
Alignment:
Q  45 aaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||||||| |||||||||||||||||||    
T  6129950 aaaagagtcttataattagggacggaggtagtaa 6129917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 7763749 - 7763786
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  7763749 ttctcaaaagggtcttataattagggacggaggtagta 7763786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 27037306 - 27037269
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  27037306 ttctcaaaagggtcttataattagggacggaggtagta 27037269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 42276161 - 42276198
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  42276161 ttctcaaaagggtcttataattagggacggaggtagta 42276198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 43456621 - 43456658
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  43456621 ttctcaaaagggtcttataattagggacggaggtagta 43456658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 45285810 - 45285843
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggt 73  Q
    ||||||||||||||||||| ||||||||||||||    
T  45285810 ttctcaaaagagtcttataattagggacggaggt 45285843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 47754054 - 47754017
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  47754054 ttctcaaaagagttttataattagggacggaggtagta 47754017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 45943978 - 45944010
Alignment:
Q  45 aaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||| ||||||||||||||||||    
T  45943978 aaaagagtcttataattagggacggaggtagta 45944010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 2152240 - 2152285
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaaataaaag 85  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||    
T  2152240 ttctcaaaagggtcttataattagggacggaggtagtatataaaag 2152285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 5774085 - 5774048
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  5774085 ttctcaaaagagtcttataattagggacggaggtagta 5774048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 18641380 - 18641418
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  18641380 ttctcaaaagggtcttataattagggacggaggtagtaa 18641418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 31619248 - 31619286
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  31619248 ttctcaaaatggtcttatatttagggacggaggtagtaa 31619286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 35179634 - 35179600
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  35179634 tcaaaagagtcttataattagggacggaggtagta 35179600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 36177103 - 36177141
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  36177103 ttctcaaaagagtcttataattagggacggagggagtaa 36177141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 37023284 - 37023322
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  37023284 ttctcaaaagagtcttataattagggacggaggcagtaa 37023322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 2152013 - 2151980
Alignment:
Q  44 caaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| |||||||||||||||||    
T  2152013 caaaagagtcttatatatagggacggaggtagta 2151980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 5162341 - 5162304
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  5162341 ttctcaaaagggtcttataattagggacggaggtagta 5162304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 6050557 - 6050594
Alignment:
Q  42 ctcaaaagagtcttatatttagggacggaggtagtaaa 79  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6050557 ctcaaaagggtcttataattagggacggaggtagtaaa 6050594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 8566239 - 8566202
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  8566239 ttctcaaaagagtcttataattaggaacggaggtagta 8566202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 12802648 - 12802611
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  12802648 ttctcaaaagggtcttataattagggacggaggtagta 12802611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 17069844 - 17069881
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  17069844 ttctcaaaagggtcttataattagggacggaggtagta 17069881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 17578429 - 17578392
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  17578429 ttctcaaaagggtcttataattagggacggaggtagta 17578392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 23719314 - 23719281
Alignment:
Q  44 caaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  23719314 caaaagagtcttatatttatggacggaggtagta 23719281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 33980502 - 33980465
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  33980502 ttctcaaaaaagtcttataattagggacggaggtagta 33980465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 35504352 - 35504315
Alignment:
Q  44 caaaagagtcttatatttagggacggaggtagtaaata 81  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  35504352 caaaagagtcttatatatagggacggagggagtaaata 35504315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 43654203 - 43654240
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  43654203 ttctcaaaagagtcttataattagggacggagggagta 43654240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 44748463 - 44748500
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  44748463 ttctcaaaagaatcttataattagggacggaggtagta 44748500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 12930355 - 12930318
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12930355 ttctcaaaagagtcttataattagggacggaggtagta 12930318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 18751982 - 18752019
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  18751982 ttctcaaaagagtcttataattagggacggaggtagta 18752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 46148500 - 46148431
Alignment:
Q  9 caaaggggtcttataataagagacnnnnnnn-ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||||||||        |||||||||  |||||||||||||||||||||||||||    
T  46148500 caaaggggtcttataataagagacaaaaaaaattctcaaaaaggtcttatatttagggacggaggtagta 46148431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 25247659 - 25247727
Alignment:
Q  9 caaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||| |||       ||||||||||||||||||| ||||||||||||| ||||    
T  25247659 caaaggggtcttataaaaagggacaaaaaaattctcaaaagagtcttataattagggacggagggagta 25247727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 7607635 - 7607669
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||| |||||||||||||||||||||||||||    
T  7607635 tcaaaagggtcttatatttagggacggaggtagta 7607669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 9682636 - 9682602
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  9682636 tcaaaagagtcttataattagggacggaggtagta 9682602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 32118129 - 32118200
Alignment:
Q  6 tagcaaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||| |||       || ||||||| |||||||| ||||||||||||||||||    
T  32118129 tagcaaaggggtcttataaaaagggacaatttttttttcaaaagggtcttataattagggacggaggtagta 32118200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 33381539 - 33381610
Alignment:
Q  6 tagcaaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||| |||        ||||||||| |||||||| ||||||||||||||||||    
T  33381539 tagcaaaggggtcttataaaaagggacaaaaaaaatctcaaaagggtcttataattagggacggaggtagta 33381610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 2290016 - 2290053
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  2290016 ttctcaaaagggtcttataattagggacggaggtagta 2290053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 34012517 - 34012554
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  34012517 ttctcaaaagggtcttataattagggacggaggtagta 34012554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 34979077 - 34979114
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  34979077 ttctcaaaagagtcttataattagggacggagggagta 34979114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 35888574 - 35888607
Alignment:
Q  44 caaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||| ||||||||||||||||||||||||||    
T  35888574 caaaagactcttatatttagggacggaggtagta 35888607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 8503505 - 8503542
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8503505 ttctcaaaagggtcttatatttagggacggaggtagta 8503542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 36584744 - 36584704
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagtaaataaa 83  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  36584744 tcaaaagagtcttataattagggacagaggtagtaaataaa 36584704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 4564271 - 4564236
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||||||||| |||||||||||||||||||    
T  4564271 tcaaaagagtcttataattagggacggaggtagtaa 4564236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 20621687 - 20621722
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||||||||| |||||||||||||||||||    
T  20621687 tcaaaagagtcttataattagggacggaggtagtaa 20621722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 49383412 - 49383344
Alignment:
Q  9 caaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||| |||       || |||||||||||||||| ||||||||||||||||||    
T  49383412 caaaggggtcttataaaaagggacaatttttttttcaaaagagtcttataattagggacggaggtagta 49383344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 47008502 - 47008540
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  47008502 ttctcaaaagtgtcttataattagggacggaggtagtaa 47008540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 1450279 - 1450242
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  1450279 ttctcaaaagagtcttataattagggacgaaggtagta 1450242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 4759351 - 4759388
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  4759351 ttctcaaaagggtcttataattagggacggaggtagta 4759388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 8321962 - 8321925
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  8321962 ttctcaaaagggtcttataattagggacggaggtagta 8321925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 24087335 - 24087372
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  24087335 ttctcaaaagggtcttataattagggacggaggtagta 24087372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 26221325 - 26221288
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  26221325 ttctcaaaagagtcttataattagggacggagggagta 26221288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 30819915 - 30819878
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  30819915 ttctcaaaagggtcttatagttagggacggaggtagta 30819878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 35572454 - 35572491
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  35572454 ttctcaaaagagtcttatacttaaggacggaggtagta 35572491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 41392880 - 41392917
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  41392880 ttctcaaaagggtcttataattagggacggaggtagta 41392917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 46845492 - 46845529
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  46845492 ttctcaaaagggtcttataattagggacggaggtagta 46845529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 49383833 - 49383870
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  49383833 ttctcaaaagagtcttataattagagacggaggtagta 49383870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 14428647 - 14428603
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaaataaaa 84  Q
    |||||||||| |||||||| ||||||||||||| ||||| |||||    
T  14428647 ttctcaaaagggtcttataattagggacggagggagtaattaaaa 14428603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 11865289 - 11865326
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11865289 ttctcaaaagagtcttataattagggacggaggtagta 11865326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 26334845 - 26334882
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  26334845 ttctcaaaagagtcttataattagggacggaggtagta 26334882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 40789091 - 40789126
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||||||||| |||||||||||||||||||    
T  40789091 tcaaaagagtcttataattagggacggaggtagtaa 40789126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 8912874 - 8912912
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  8912874 ttctcaaaagggtcttataattagggacggaggtagtaa 8912912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 13598556 - 13598522
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||| |||||||||||||||||||||||||||    
T  13598556 tcaaaagggtcttatatttagggacggaggtagta 13598522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 16108475 - 16108517
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaaataa 82  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||    
T  16108475 ttctcaaaagaatcttataattagggacggagggagtaaataa 16108517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 2060353 - 2060316
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  2060353 ttctcaaaagggtcttataattagggacggaggtagta 2060316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 6028606 - 6028639
Alignment:
Q  44 caaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||| ||||||||||||||||||||||||||    
T  6028606 caaaagactcttatatttagggacggaggtagta 6028639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 7116299 - 7116336
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  7116299 ttctcaaaagggtcttataattagggacggaggtagta 7116336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 26322293 - 26322330
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  26322293 ttctcaaaagggtcttataattagggacggaggtagta 26322330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 28566188 - 28566151
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  28566188 ttctcaaaagggtcttataattagggacggaggtagta 28566151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 38121511 - 38121548
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  38121511 ttctcaaaagagtcttattattagggacggaggtagta 38121548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 20455149 - 20455218
Alignment:
Q  8 gcaaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||| ||| |||       |||||||||| |||||||| ||||||||||||||||||    
T  20455149 gcaaaggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggaggtagta 20455218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 49373693 - 49373737
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaaataaaa 84  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||    
T  49373693 ttctcaaaagggtcttataattagggacggaggtagtaattaaaa 49373737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 13549014 - 13548980
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  13549014 tcaaaagagtcttataattagggacggaggtagta 13548980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 15241517 - 15241479
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  15241517 ttctcaaaagagtcttataattagggacggagggagtaa 15241479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 30050087 - 30050121
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  30050087 tcaaaagagtcttataattagggacggaggtagta 30050121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 53564356 - 53564394
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  53564356 ttctcaaaagggtcttataattagggacggaggtagtaa 53564394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 4416002 - 4415965
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  4416002 ttctcaaaagggtcttataattagggacggaggtagta 4415965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 25124246 - 25124283
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  25124246 ttctcaaaagggtcttataattagggacggaggtagta 25124283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 28501386 - 28501423
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  28501386 ttctcaaaagggtcttataattagggacggaggtagta 28501423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 29520164 - 29520201
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  29520164 ttctcaaaagggtcttataattagggacggaggtagta 29520201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 31937113 - 31937076
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  31937113 ttctcaaaagggtcttataattagggacggaggtagta 31937076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 46950029 - 46949992
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  46950029 ttctcaaaagggtcttataattagggacggaggtagta 46949992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 49793128 - 49793091
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  49793128 ttctcaaaagggtcttataattagggacggaggtagta 49793091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 55563128 - 55563165
Alignment:
Q  41 tctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  55563128 tctcaaaagggtcttataattagggacggaggtagtaa 55563165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 56432555 - 56432518
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  56432555 ttctcaaaagggtcttataattagggacggaggtagta 56432518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 4549889 - 4549921
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggagg 72  Q
    ||||||||||||||||||| |||||||||||||    
T  4549889 ttctcaaaagagtcttataattagggacggagg 4549921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 6462691 - 6462727
Alignment:
Q  41 tctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  6462691 tctcaaaagaatcttataattagggacggaggtagta 6462727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 23623899 - 23623935
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagtaaa 79  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  23623899 tcaaaagagtcatataattagggacggaggtagtaaa 23623935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 32899219 - 32899255
Alignment:
Q  41 tctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  32899219 tctcaaaagggtcttataattagggacggaggtagta 32899255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 37639888 - 37639924
Alignment:
Q  41 tctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||||| |||||||||||| |||||    
T  37639888 tctcaaaagagtcttataattagggacggagatagta 37639924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 5188 - 5150
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  5188 ttctcaaaagggtcttataattagggacggaggtagtaa 5150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 3748 - 3819
Alignment:
Q  6 tagcaaaggggtcttataataagagacnnnnnnnttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||| |||       |||||||||| |||||||| ||||||||||||| ||||    
T  3748 tagcaaaggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggagggagta 3819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 10182 - 10220
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  10182 ttctcaaaagggtcttataattagggacggaggtagtaa 10220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 18534 - 18496
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  18534 ttctcaaaagggtcttataattagggacggaggtagtaa 18496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 48691 - 48653
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  48691 ttctcaaaagggtcttataattagggacggaggtagtaa 48653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 23286474 - 23286512
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  23286474 ttctcaaaagggtcttataattagggacggaggtagtaa 23286512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 24857590 - 24857556
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  24857590 tcaaaagagtcttataattagggacggaggtagta 24857556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 39971048 - 39971014
Alignment:
Q  43 tcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  39971048 tcaaaagagtcttataattagggacggaggtagta 39971014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 40004409 - 40004455
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaaataaaaga 86  Q
    |||||||||| |||||||| ||||||||||||| |||| ||||||||    
T  40004409 ttctcaaaagggtcttataattagggacggagggagtatataaaaga 40004455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 43060411 - 43060449
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  43060411 ttctcaaaagggtcttataattagggacggaggtagtaa 43060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 3028050 - 3028013
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  3028050 ttctcaaaagggtcttataattagggacggaggtagta 3028013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 8949849 - 8949812
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  8949849 ttctcaaaagggtcttataattagggacggaggtagta 8949812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 15190815 - 15190852
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  15190815 ttctcaaaagagtcttataattagggacggagggagta 15190852  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 19571940 - 19571977
Alignment:
Q  41 tctcaaaagagtcttatatttagggacggaggtagtaa 78  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  19571940 tctcaaaagggtcttataattagggacggaggtagtaa 19571977  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 23260138 - 23260175
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  23260138 ttctcaaaagggtcttataattagggacggaggtagta 23260175  T

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Target: scaffold0457 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 4663 - 4700
Alignment:
Q  40 ttctcaaaagagtcttatatttagggacggaggtagta 77  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  4663 ttctcaaaagaatcttataattagggacggaggtagta 4700  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 55962 - 55930
Alignment:
Q  42 ctcaaaagagtcttatatttagggacggaggta 74  Q
    ||||||||||||||||||||| |||||||||||    
T  55962 ctcaaaagagtcttatatttaaggacggaggta 55930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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