View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_5 (Length: 561)
Name: NF1510_low_5
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 184 - 545
Target Start/End: Original strand, 29758903 - 29759264
Alignment:
| Q |
184 |
ctctgacagaagagtaaagtggaaacacaattggcatttcatgtggccacatttaataacatggacttccatatgtcattcacatcacccaactgccaca |
283 |
Q |
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| T |
29758903 |
ctctgacagaagagtaaagtggaaacacagttggcattttatgtggccacatttaataacatggacttccatatgtcattcacatcacccaactcccaca |
29759002 |
T |
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| Q |
284 |
tagattcctccaatcttcacaatcttctatcattttcgtcttcgtccaacatgacccagattcatacattgaagaagaaacaatgacaatgaaaacacat |
383 |
Q |
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| T |
29759003 |
tagattcctccaatcttcaccatcttctatcattttcgtcttcgtccaacatgacccagattcatacattgaagaagaaacaatgacaatgaaaacacat |
29759102 |
T |
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| Q |
384 |
cttatttgcttagttgtgaaattaaaacacatcttaatttgcttagttgcgaaattaaaagataatttaagtaataatgagtggattatctatcttccnn |
483 |
Q |
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| T |
29759103 |
cttatttgcttagttgtgaaattaaaacacatcttaatttgcttagttgcgaaattaaaacacaatttaagtaataatgagtggattatctatcttcctt |
29759202 |
T |
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| Q |
484 |
nnnnnggatctcaaaacaaatgcacaggtgcaaccacccgagaaagagaaagagcgacaagt |
545 |
Q |
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| T |
29759203 |
tttttggatctcaaaacaaatgcacaggtgcaaccacccgagaaagagaaagagcgacaagt |
29759264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 29758725 - 29758840
Alignment:
| Q |
9 |
tatgttccacataggcatcttagttggtgagcctaaacac--taaaagaattttaagtaagagacttcgggtttgatttttaaaactaacacaatcatta |
106 |
Q |
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| T |
29758725 |
tatgttccacataggcatcttagttagtgagcctaaacacattaaaagaattttaagtaagagatttcgggtttgatttttaaaactaacacaatcatta |
29758824 |
T |
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| Q |
107 |
attattaacatttgcc |
122 |
Q |
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| T |
29758825 |
attattaacatttgcc |
29758840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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