View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1510_low_6 (Length: 517)

Name: NF1510_low_6
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1510_low_6
NF1510_low_6
[»] chr2 (3 HSPs)
chr2 (213-500)||(12995348-12995636)
chr2 (5-220)||(12994758-12994974)
chr2 (4-32)||(25507247-25507275)
[»] chr8 (1 HSPs)
chr8 (305-392)||(8988351-8988438)
[»] chr6 (3 HSPs)
chr6 (296-389)||(22916802-22916896)
chr6 (296-389)||(22901971-22902066)
chr6 (296-375)||(22884087-22884168)
[»] chr1 (3 HSPs)
chr1 (294-389)||(30986678-30986774)
chr1 (293-388)||(30989894-30989990)
chr1 (291-329)||(30989855-30989893)
[»] scaffold0004 (1 HSPs)
scaffold0004 (313-393)||(224620-224700)
[»] chr5 (2 HSPs)
chr5 (3-31)||(5386077-5386105)
chr5 (4-32)||(8728632-8728660)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 213 - 500
Target Start/End: Original strand, 12995348 - 12995636
Alignment:
Q  213 cttaacgttattttttgtggtgttataa-gtaactagacaaaacaaaaaggaaaaagtagaggaaattaaggtccaagttatactaatgactatgaatat 311  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12995348 cttaacgttattttttgtggtgttataaagtaactagacaaaacaaaaaggaaaaagcagaggaaattaaggtccaagttatactaatgactatgaatat 12995447  T
Q  312 gtaaacaataaacatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactctaacaccaagggcaactttatatacacctttaattt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  12995448 gtaaacaataaacatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactataacaccaagggcaacttcatatacacctttaattt 12995547  T
Q  412 ttctctattcattttcgttctagaaattttaactggtggagctaagattttatactttataaaaatagcacaaacgaaaagacttaact 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12995548 ttctctattcattttcgttctagaaattttaactggtggagctaagattttatactttataaaaatagcacaaacgaaaagacttaact 12995636  T

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Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 12994758 - 12994974
Alignment:
Q  5 ttgtacaaatatcatttctcaaatataattcgctcatatgacaatctaccaaattacttttaatgtcaa--tttgatatcatgaatgtctaaaagagaag 102  Q
    ||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  12994758 ttgtacaaatatcatttttcaaatataattcactcagatgacaatctaccaaattacttttaatgccaaaatttgatatcatgaatgtctaaaagagaag 12994857  T
Q  103 aatatataaattacaaatttaaaatctnnnnnnnnntacaaaaagtaaattggaattcattcaaacgatagatgaaaaactgcatctaattgaaaatata 202  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12994858 aatatataaattacaaatttaaaatct-aaaaaaaatacaaaaagtaaattggaattcattcaaacgatagatgaaaaagtgcatctaattgaaaatata 12994956  T
Q  203 ctatacttatcttaacgt 220  Q
    ||||||||||||||||||    
T  12994957 ctatacttatcttaacgt 12994974  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 25507275 - 25507247
Alignment:
Q  4 gttgtacaaatatcatttctcaaatataa 32  Q
    |||||||||||||||||||||||||||||    
T  25507275 gttgtacaaatatcatttctcaaatataa 25507247  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 392
Target Start/End: Complemental strand, 8988438 - 8988351
Alignment:
Q  305 tgaatatgtaaacaataaacatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactctaacaccaagggcaact 392  Q
    |||| |||||||||||||| |||||||| | ||||||||| |||| ||||||| ||||| |||||||||||| |||||||||||||||    
T  8988438 tgaacatgtaaacaataaatatcatcaacacacttaatacatagtataatcaaacatcatcaaaacaactcttacaccaagggcaact 8988351  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 22916896 - 22916802
Alignment:
Q  296 taatgactatgaatatgtaaacaataaacatcatcaaaatacttaatacctag-tttaatcaagcatcaccaaaacaactctaacaccaagggca 389  Q
    |||| |||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||| |  ||||||||||    
T  22916896 taattactatgaacatgtaaacaataaacatcatcaacacacttaatacctagttttaatcaaacatcatcaaaacaactccattaccaagggca 22916802  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 22902066 - 22901971
Alignment:
Q  296 taatgactatgaatatgtaaacaataaacatcatcaaa-atacttaatacctag-tttaatcaagcatcaccaaaacaactctaacaccaagggca 389  Q
    |||| |||||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||| |  ||||||||||    
T  22902066 taattactatgaacatgtaaacaataaacatcatcaaacacacttaatacctagttttaatcaaacatcatcaaaacaactccattaccaagggca 22901971  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 22884168 - 22884087
Alignment:
Q  296 taatgactatgaatatgtaaacaataaacatcatcaaa-atacttaatacctag-tttaatcaagcatcaccaaaacaactc 375  Q
    |||| |||||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| |||||||||||    
T  22884168 taattactatgaacatgtaaacaataaacatcatcaaacacacttaatacctagttttaatcaatcatcatcaaaacaactc 22884087  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 30986678 - 30986774
Alignment:
Q  294 actaatgactatgaatatgtaaacaataaacatcatcaaaatacttaatacctagt-ttaatcaagcatcaccaaaacaactctaacaccaagggca 389  Q
    |||||| ||||||||||||||||||||||  ||| |||| | |||||||| | | | |||||||| ||||| |||||||||||||||| ||||||||    
T  30986678 actaattactatgaatatgtaaacaataataatcttcaacacacttaatatccaatcttaatcaaacatcatcaaaacaactctaacatcaagggca 30986774  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 388
Target Start/End: Original strand, 30989894 - 30989990
Alignment:
Q  293 tactaatgactatgaatatgtaaacaataaacatcatcaaaatacttaatacctagt-ttaatcaagcatcaccaaaacaactctaacaccaagggc 388  Q
    ||||||| ||||| || ||||||| ||||||||||||||| | |||||||||||||| |||||||| ||| | ||||||||||| ||  ||||||||    
T  30989894 tactaattactataaacatgtaaataataaacatcatcaacacacttaatacctagtcttaatcaaacatgatcaaaacaactccaatgccaagggc 30989990  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 30989855 - 30989893
Alignment:
Q  291 tatactaatgactatgaatatgtaaacaataaacatcat 329  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  30989855 tatactaattactatgaacatgtaaacaataaacatcat 30989893  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 224700 - 224620
Alignment:
Q  313 taaacaataaacatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactctaacaccaagggcaactt 393  Q
    ||||||||||| ||||| |||||||||| |||||| | |  |||| ||||  ||||||||||||| ||| ||| |||||||    
T  224700 taaacaataaatatcattaaaatacttagtacctaatcttgtcaaacatcgtcaaaacaactctagcactaagagcaactt 224620  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 5386105 - 5386077
Alignment:
Q  3 agttgtacaaatatcatttctcaaatata 31  Q
    |||||||||||||||||||||||||||||    
T  5386105 agttgtacaaatatcatttctcaaatata 5386077  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 8728632 - 8728660
Alignment:
Q  4 gttgtacaaatatcatttctcaaatataa 32  Q
    |||||||||||||||||||||||||||||    
T  8728632 gttgtacaaatatcatttctcaaatataa 8728660  T

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