View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1510_low_7 (Length: 515)
Name: NF1510_low_7
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1510_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 188 - 500
Target Start/End: Original strand, 1879910 - 1880222
Alignment:
| Q |
188 |
atcttctggtttttggtgaaaagggc-atagtaatatgaaattcgattgaaaagctaataaagtttggtaaaaaattgttctactcggatatcgaacttg |
286 |
Q |
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| T |
1879910 |
atcttctggtttttggtgaaaagggttatagtaatatgaaattcgatcgaaaagttaataaagtttggtaaaaaattgttctattcgagaatcgaattcg |
1880009 |
T |
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| Q |
287 |
gttttcctaaacaattcgtctgttaaccacttaagtcagagcacttagttcctcacttatcaattagaacatgttttcttatctgagttcttgctcgaaa |
386 |
Q |
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| T |
1880010 |
gttctcctaaacaattcgtgtgttaaccacttaagtcagagcacttagttcctcccttatcaattagaacatgttttcttatttgagttcttgctcgaaa |
1880109 |
T |
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| Q |
387 |
taacctgttgaatattgagagtttttcatcttatattcaagtgtannnnnnnnnaaagtatattcatgtgtattctctaaaattttgttgtttattttct |
486 |
Q |
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| T |
1880110 |
taacctgttgaatattgagaggtttttatcttatattcaagtata-ttttttttaaagtatattcatgtgtattctctaaaattttgttgtttatttttg |
1880208 |
T |
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| Q |
487 |
aggttcatgattct |
500 |
Q |
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| T |
1880209 |
aggttcatgattct |
1880222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 1879736 - 1879856
Alignment:
| Q |
14 |
ttctaacaatcgtctatttgatgttttcactttggtacattttaatggtaagatttgtggaatgttttgttcatattttaaaagttctaaacaccaaatt |
113 |
Q |
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| T |
1879736 |
ttctaacaatcgtctatttgatgttttcactttggtacattttaatggtaggatttatggaatgttttgatcatattttaaaagttttaaacaccaaatt |
1879835 |
T |
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| Q |
114 |
ccacactactaagtgtggaac |
134 |
Q |
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| T |
1879836 |
ccacactactaagcgtggaac |
1879856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 1886344 - 1886405
Alignment:
| Q |
34 |
atgttttcactttggtacattttaatggtaagatttgtggaatgttttgttcatattttaaa |
95 |
Q |
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| T |
1886344 |
atgttttcactatggtacattttactggtaggatttgtggaatattttgttcatattttaaa |
1886405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 1886832 - 1886872
Alignment:
| Q |
373 |
gttcttgctcgaaataacctgttgaatattgagagtttttc |
413 |
Q |
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| T |
1886832 |
gttcttgcttgaaagaacatgttgaatattgagagtttttc |
1886872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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