View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1510_low_8 (Length: 490)

Name: NF1510_low_8
Description: NF1510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1510_low_8
NF1510_low_8
[»] chr1 (5 HSPs)
chr1 (319-474)||(4856091-4856246)
chr1 (13-159)||(4854255-4854400)
chr1 (158-310)||(9388561-9388714)
chr1 (196-310)||(10366566-10366681)
chr1 (243-306)||(52547962-52548025)
[»] chr5 (7 HSPs)
chr5 (159-310)||(900886-901038)
chr5 (160-311)||(2250326-2250478)
chr5 (160-310)||(15434413-15434564)
chr5 (158-259)||(30839962-30840064)
chr5 (251-310)||(30839720-30839779)
chr5 (182-283)||(33699997-33700099)
chr5 (229-285)||(8317392-8317448)
[»] chr7 (5 HSPs)
chr7 (158-312)||(6494742-6494897)
chr7 (159-310)||(38174621-38174773)
chr7 (158-310)||(45849426-45849580)
chr7 (182-282)||(22609829-22609930)
chr7 (253-297)||(44732493-44732537)
[»] chr3 (5 HSPs)
chr3 (157-311)||(26847674-26847829)
chr3 (163-306)||(40034732-40034876)
chr3 (175-310)||(2043732-2043870)
chr3 (158-217)||(30074962-30075021)
chr3 (165-221)||(8913946-8914002)
[»] chr4 (8 HSPs)
chr4 (160-281)||(33152453-33152575)
chr4 (158-309)||(3684733-3684885)
chr4 (158-252)||(2728600-2728695)
chr4 (251-311)||(2728255-2728315)
chr4 (160-285)||(12842304-12842431)
chr4 (160-285)||(2933581-2933707)
chr4 (157-285)||(4734112-4734241)
chr4 (253-285)||(48150577-48150609)
[»] chr2 (2 HSPs)
chr2 (160-310)||(33538176-33538327)
chr2 (229-285)||(40611590-40611646)
[»] chr6 (13 HSPs)
chr6 (164-310)||(29396445-29396592)
chr6 (161-304)||(22995981-22996123)
chr6 (161-304)||(23792277-23792419)
chr6 (164-311)||(18141382-18141530)
chr6 (168-306)||(21203236-21203381)
chr6 (208-312)||(22956978-22957083)
chr6 (208-312)||(23831309-23831414)
chr6 (159-281)||(7045131-7045254)
chr6 (166-310)||(9961152-9961297)
chr6 (159-281)||(6266426-6266549)
chr6 (166-284)||(33029650-33029769)
chr6 (156-282)||(34576144-34576271)
chr6 (190-281)||(33423685-33423777)
[»] chr8 (6 HSPs)
chr8 (244-306)||(37819894-37819956)
chr8 (160-284)||(43899034-43899160)
chr8 (264-310)||(24511976-24512022)
chr8 (160-202)||(24512327-24512369)
chr8 (263-308)||(36796082-36796127)
chr8 (266-310)||(5857526-5857570)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 319 - 474
Target Start/End: Original strand, 4856091 - 4856246
Alignment:
319 aatataagtgtgtatgtgtgagagagagcgcgtccatgtgtacgcataacgctaaaaattaatataattatttccctcaaaaattaaaatttctaggttt 418  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||    
4856091 aatataagtgtgtatgtgtgagagagagcgcgtccatgtgtgcgcataacgctacaaattaatataattgtttcccacaaaaattaaaatttctaggttt 4856190  T
419 gttattgtttaatacagtaaacatatatgtgtatcattagtaaacaagggacatat 474  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
4856191 gttattgtttaatacaggaaacatatatgtgtatcattagtaaacaagggacatat 4856246  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 4854255 - 4854400
Alignment:
13 atactaactgtcattacataaatatgttctaactattttctaaccataactaatatacttgcacagtttccaatattatcttgctggtttttccatcaca 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
4854255 atactaattgtcattacataaatatgttctaactattttctaaccataactaatatacttgcacagtttccaatattaccttgctgg-ttttccatcaca 4854353  T
113 caatcaattatactaacaagagtttaaaggcatacacacaaaaataa 159  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
4854354 caatcaattatactaacaagagtttaaacgcatacacacaaaaataa 4854400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 158 - 310
Target Start/End: Complemental strand, 9388714 - 9388561
Alignment:
158 aagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaa 256  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||| ||||   ||||| ||||||  |||||||| |||||    
9388714 aagaactatgttatttgtacctctaaaattgaacaaccaatgcaacaacctctaattttgtgaggagcacataaatcgaaatcagacaaaatatcattaa 9388615  T
257 aaatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    |||||| |||||||||||||||||||||||||  |||||||| |||||||||||    
9388614 aaatagtaaataagttgttggttgtacaatttaattgttcacatatcattcctc 9388561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 10366681 - 10366566
Alignment:
196 aatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaatagcaaataagttgttggttgtacaatttggttgt 294  Q
    ||||||||||| ||||| ||| |||| ||||   ||||| ||||||   ||||||| |||||||||| ||||||||||||||||||||||||||| ||||    
10366681 aatgcaacaacctttaactttatgaggagcacataaatcgaaatcaaataaaatatcattaaaaataacaaataagttgttggttgtacaatttgattgt 10366582  T
295 tcacgtatcattcctc 310  Q
    ||||||||||||||||    
10366581 tcacgtatcattcctc 10366566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 52548025 - 52547962
Alignment:
243 caaaatattattaaaaatagcaaataagttgttggttgtacaatttggttgttcacgtatcatt 306  Q
    ||||||||  ||| |||||  ||| |||||||| ||||||||| ||||||||||||||||||||    
52548025 caaaatatatttataaatataaaacaagttgttcgttgtacaaattggttgttcacgtatcatt 52547962  T

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Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 901038 - 900886
Alignment:
159 agagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaa 257  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||    
901038 agagctatgttatttgtacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcatggaaaacaaaatcatgcaaaatatcattaaa 900939  T
258 aatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
900938 aatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 900886  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 160 - 311
Target Start/End: Complemental strand, 2250478 - 2250326
Alignment:
160 gagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaa 258  Q
    |||||||||||||| || ||||||||||| | ||||||||||| || ||||||||||||||| || | |||||||||||||||||||||||| |||||||    
2250478 gagctatgttatttgtatatctaaaattggataaccaatgcaataatttttaattttgtgaggagtacggaaatcaaaatcatgcaaaatatcattaaaa 2250379  T
259 atagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctca 311  Q
    |||  |||||| |||||| |||||||||||| || ||||| ||||||||||||    
2250378 ataataaataaattgttgattgtacaatttgattcttcacatatcattcctca 2250326  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 160 - 310
Target Start/End: Complemental strand, 15434564 - 15434413
Alignment:
160 gagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaa 258  Q
    ||||| |||||||| ||||||||||| || ||||  |||| |||||| ||||| ||| |||| ||||  ||||||||||||| ||||||||| |||||||    
15434564 gagctgtgttatttgtacatctaaaagtggacaattaatggaacaacctttaactttatgaggagcacagaaatcaaaatcaagcaaaatatcattaaaa 15434465  T
259 atagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||    
15434464 gtagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 15434413  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 30840064 - 30839962
Alignment:
158 aagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaa 256  Q
    ||||||||| |||||| ||||| |||||||| |||| ||||| |||||| ||||| |||||||| || |  |||||| |||||| |||||||||||||||    
30840064 aagagctatattatttgtacatataaaattggacaatcaatggaacaacctttaactttgtgaggagtacagaaatcgaaatcaagcaaaatattattaa 30839965  T
257 aaa 259  Q
    |||    
30839964 aaa 30839962  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 30839779 - 30839720
Alignment:
251 tattaaaaatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    ||||||||||||||| ||| |||||||| ||||||||| ||||||||| |||||||||||    
30839779 tattaaaaatagcaagtaaattgttggtcgtacaatttagttgttcacatatcattcctc 30839720  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 33699997 - 33700099
Alignment:
182 aaaattgaacaaccaatgcaacaacttttaattttgtgaga-gcatggaaatcaaaatcatgcaaaatattattaaaaatagcaaataagttgttggttg 280  Q
    ||||||||||||| ||||||||| | ||| ||  ||||||| ||| | |||||||||||||  |||||||  | |||||| |||||  ||||||||||||    
33699997 aaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaaattgcaaaagagttgttggttg 33700096  T
281 tac 283  Q
    |||    
33700097 tac 33700099  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 8317392 - 8317448
Alignment:
229 aaatcaaaatcatgcaaaatattattaaaaatagcaaataagttgttggttgtacaa 285  Q
    ||||||||||||   |||||||  | |||||||||||| ||||||||||||||||||    
8317392 aaatcaaaatcagtaaaaatatattaaaaaatagcaaaaaagttgttggttgtacaa 8317448  T

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Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 312
Target Start/End: Complemental strand, 6494897 - 6494742
Alignment:
158 aagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattattaa 256  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||    
6494897 aagagctatgttatttgtacatctaaaattggacaaccaatgcaacaacttttaattttgtgaagagcacggaaaacaaaatcatgcaaaatatcattaa 6494798  T
257 aaatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctcaa 312  Q
    |||||||||||||||| ||| ||||||||||| ||||||||| |||||||||||||    
6494797 aaatagcaaataagttattgattgtacaattttgttgttcacatatcattcctcaa 6494742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 38174773 - 38174621
Alignment:
159 agagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaa 257  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| ||||  |||||| |||||| ||||||||||||||||    
38174773 agagctatgttatttgtacatctaaaattggacaaccaatgcaacaacctttaactttgtgaggagcacagaaatcgaaatcaagcaaaatattattaaa 38174674  T
258 aatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||||||||||    
38174673 aatatcaagtaagttattggttgtacaatttggttgttcacgtatcattcctc 38174621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 158 - 310
Target Start/End: Original strand, 45849426 - 45849580
Alignment:
158 aagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatc-aaaatcatgcaaaatattatta 255  Q
    |||||||||||||||| |||||||||||||  |||| ||||||||||||||||||| ||||||| ||||   ||||  ||||||| ||||||||||||||    
45849426 aagagctatgttatttgtacatctaaaatttgacaatcaatgcaacaacttttaatgttgtgaggagcacataaattgaaaatcaagcaaaatattatta 45849525  T
256 aaaatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
45849526 aaaatagcaaataaattattggttgtacaatttggttgttcacgtatcattcctc 45849580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 22609930 - 22609829
Alignment:
182 aaaattgaacaaccaatgcaacaacttttaattttgtgaga-gcatggaaatcaaaatcatgcaaaatattattaaaaatagcaaataagttgttggttg 280  Q
    ||||||||||||| ||||||||| | ||| ||  ||||||| ||| | |||||||||||||  |||||||  |||||||| |||||  |||||||| |||    
22609930 aaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatatttaaaaattgcaaaagagttgttgattg 22609831  T
281 ta 282  Q
    ||    
22609830 ta 22609829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 44732493 - 44732537
Alignment:
253 ttaaaaatagcaaataagttgttggttgtacaatttggttgttca 297  Q
    ||||||||| |||||||||| |||||||||||| ||| |||||||    
44732493 ttaaaaataacaaataagttattggttgtacaaattgattgttca 44732537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 157 - 311
Target Start/End: Original strand, 26847674 - 26847829
Alignment:
157 taagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattatta 255  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| ||||    
26847674 taagagctatgttatttgtacatctaaaattagacaaccaatgcaataacttttaattttgtgaggagcacggaaaacaaaatcatgcaaaatatcatta 26847773  T
256 aaaatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctca 311  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
26847774 aaaatagcaaataagttgttggttgtacaatttgattgttcacatatcattcctca 26847829  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 163 - 306
Target Start/End: Complemental strand, 40034876 - 40034732
Alignment:
163 ctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaata 261  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||| |||| |||||| ||||||||| ||||||||||||||||||    
40034876 ctatgttatttgtacatttaaaattggacaaccaatgcaacaacttttaattttatgaggagcacggaaattaaaatcatgtaaaatattattaaaaata 40034777  T
262 gcaaataagttgttggttgtacaatttggttgttcacgtatcatt 306  Q
      ||||||||||||||||||||||||||  ||||||| |||||||    
40034776 ataaataagttgttggttgtacaatttgaatgttcacatatcatt 40034732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 2043870 - 2043732
Alignment:
175 tacatctaaaattgaacaaccaatgcaaca--acttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaatagcaaataagt 271  Q
    |||||||||||||| |||| ||||||||||  |||||||| ||||| || ||||   ||||| ||||||  |||||||| |||||| |||||||||||||    
2043870 tacatctaaaattggacaatcaatgcaacacaacttttaactttgtaaggagcacataaatcgaaatcaatcaaaatatcattaaagatagcaaataagt 2043771  T
272 tgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    ||||||||||||||||| ||| || || |||||||||||    
2043770 tgttggttgtacaatttagttatttacatatcattcctc 2043732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 30075021 - 30074962
Alignment:
158 aagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttg 217  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
30075021 aagagctatgttatttgtacatctaaaattggacaaccaatgcaacaacttttaattttg 30074962  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 8914002 - 8913946
Alignment:
165 atgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag 221  Q
    ||||||||| ||||   ||||||||||||| ||||||||||| |||||| |||||||    
8914002 atgttatttgtacaatcaaaattgaacaactaatgcaacaacctttaatattgtgag 8913946  T

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Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 33152453 - 33152575
Alignment:
160 gagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattattaaaa 258  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
33152453 gagctatgttatttgtacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 33152552  T
259 atagcaaataagttgttggttgt 281  Q
    |||||||||||||||||||||||    
33152553 atagcaaataagttgttggttgt 33152575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 158 - 309
Target Start/End: Complemental strand, 3684885 - 3684733
Alignment:
158 aagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaa 256  Q
    |||||||||||||| | |||||||||||||| | || |||||||||||| ||||| |||||||| ||||   ||||| ||||||  ||||||||||||||    
3684885 aagagctatgttatatgtacatctaaaattggataatcaatgcaacaacctttaactttgtgaggagcacaaaaatcgaaatcagacaaaatattattaa 3684786  T
257 aaatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcct 309  Q
    ||||||||||||  ||||||||| |||||||| ||||||||| ||| ||||||    
3684785 aaatagcaaatatattgttggttttacaatttagttgttcacatattattcct 3684733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 2728695 - 2728600
Alignment:
158 aagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatatta 252  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||| |||||   ||||| |||||| |||||||||||    
2728695 aagagctatgttatttgtacatttaaaattggacaaccaatgcaacaacctttaactttgtgaggagcacataaatcgaaatcaagcaaaatatta 2728600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 2728315 - 2728255
Alignment:
251 tattaaaaatagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctca 311  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||    
2728315 tattaaaaatagcaagtaagttgttggttgtataatttagttgttcacatatcattcctca 2728255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 12842431 - 12842304
Alignment:
160 gagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaa 258  Q
    |||| ||||||||| |||| | |||||| |||||| ||| ||||||| |||||| ||||||| | |||| ||||||||||||   |||| | ||||||||    
12842431 gagcaatgttatttgtacaaccaaaattcaacaactaatacaacaacctttaatattgtgaggaacatgcaaatcaaaatcactaaaaaaaatattaaaa 12842332  T
259 a-tagcaaataagttgttggttgtacaa 285  Q
    | ||||||| ||||||||||||||||||    
12842331 aatagcaaagaagttgttggttgtacaa 12842304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 2933707 - 2933581
Alignment:
160 gagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattattaaaa 258  Q
    |||| ||||||||| |||| | ||||||||||||| |||| ||||| ||||||| |||||| ||||  | ||||||||||||   |||| ||  | ||||    
2933707 gagcaatgttatttgtacaaccaaaattgaacaactaatgtaacaatttttaatattgtgaggagcgcgcaaatcaaaatcactaaaaaaatattaaaaa 2933608  T
259 atagcaaataagttgttggttgtacaa 285  Q
    |||| |||  |||||||||||||||||    
2933607 atagtaaaatagttgttggttgtacaa 2933581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 4734112 - 4734241
Alignment:
157 taagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattatt- 254  Q
    ||||||| ||||||||| || |   ||||||||||||   ||||||||||||||||| |||||| ||||| |  |||||||||||   |||| | ||||     
4734112 taagagcaatgttatttgtataatcaaaattgaacaatttatgcaacaacttttaatattgtgaggagcacgccaatcaaaatca-ctaaaagaatatta 4734210  T
255 aaaaatagcaaataagttgttggttgtacaa 285  Q
    ||||||||||||  |||||||||||||||||    
4734211 aaaaatagcaaaatagttgttggttgtacaa 4734241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 48150609 - 48150577
Alignment:
253 ttaaaaatagcaaataagttgttggttgtacaa 285  Q
    |||||||||||||||||||||| ||||||||||    
48150609 ttaaaaatagcaaataagttgtcggttgtacaa 48150577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 160 - 310
Target Start/End: Complemental strand, 33538327 - 33538176
Alignment:
160 gagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaa 258  Q
    |||||||||||||| ||||| |||||||| ||||||||||||| || ||||||||||||||| || | |||||||||||||||||||||||| |||||||    
33538327 gagctatgttatttgtacatttaaaattggacaaccaatgcaataatttttaattttgtgaggagtacggaaatcaaaatcatgcaaaatatcattaaaa 33538228  T
259 atagcaaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    |||| |||||||||||||||||||||||||| || ||||| |||||||||||    
33538227 atagtaaataagttgttggttgtacaatttgatttttcacatatcattcctc 33538176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 40611646 - 40611590
Alignment:
229 aaatcaaaatcatgcaaaatattattaaaaatagcaaataagttgttggttgtacaa 285  Q
    ||||||||||||   |||||||  | |||||||||||| ||||||||||||||||||    
40611646 aaatcaaaatcaataaaaatatattaaaaaatagcaaaaaagttgttggttgtacaa 40611590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 29396592 - 29396445
Alignment:
164 tatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaatag 262  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| ||||   ||||| ||||||  |||||||| |||||||||||    
29396592 tatgttatttgtacatctaaaattggacaaccaatgcaacaacctttaactttgtgaggagcacaaaaatcgaaatcaatcaaaatatcattaaaaatag 29396493  T
263 caaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||    
29396492 caaataagttgttggttgtacaatttggctgttcacatatcattcctc 29396445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 161 - 304
Target Start/End: Complemental strand, 22996123 - 22995981
Alignment:
161 agctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattattaaaaa 259  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| ||||| ||||||| |||||   ||||| |||||| ||||||||||||||||||    
22996123 agctatgttatttgtacatctaaaattggacaaccaatgtaacaacctttaactttgtgaggagcacataaatcgaaatcaggcaaaatattattaaaaa 22996024  T
260 tagcaaataagttgttggttgtacaatttggttgttcacgtatca 304  Q
    ||||||  |||||||||||| |||||||||||||||||| |||||    
22996023 tagcaa--aagttgttggttatacaatttggttgttcacatatca 22995981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 161 - 304
Target Start/End: Original strand, 23792277 - 23792419
Alignment:
161 agctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattattaaaaa 259  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| ||||| ||||||| |||||   ||||| |||||| ||||||||||||||||||    
23792277 agctatgttatttgtacatctaaaattggacaaccaatgtaacaacctttaactttgtgaggagcacataaatcgaaatcaggcaaaatattattaaaaa 23792376  T
260 tagcaaataagttgttggttgtacaatttggttgttcacgtatca 304  Q
    ||||||  |||||||||||| |||||||||||||||||| |||||    
23792377 tagcaa--aagttgttggttatacaatttggttgttcacatatca 23792419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 18141530 - 18141382
Alignment:
164 tatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaatag 262  Q
    |||||||||| ||||| |||||||| ||||||||| ||||||| ||||| |||||||| || |   ||||| |||||| | |||||||||||||||||||    
18141530 tatgttatttgtacatttaaaattggacaaccaatacaacaacctttaactttgtgaggagtacataaatcgaaatcaagtaaaatattattaaaaatag 18141431  T
263 caaataagttgttggttgtacaatttggttgttcacgtatcattcctca 311  Q
     |||||||||| ||||||||| |||||||||||||| ||||||||||||    
18141430 aaaataagttgctggttgtacgatttggttgttcacatatcattcctca 18141382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 21203236 - 21203381
Alignment:
168 ttatttatacatctaaaattgaacaaccaatgcaacaacttttaatttt------gtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaat 260  Q
    |||||| ||||| |||||||| ||||||||||||||||| ||||| |||      || || | ||| ||||||||||||| |||||| ||||||||||||    
21203236 ttatttgtacatttaaaattggacaaccaatgcaacaacctttaactttaactttgtaaggatcatagaaatcaaaatcaagcaaaacattattaaaaat 21203335  T
261 agcaaataagttgttggttgtacaatttggttgttcacgtatcatt 306  Q
    | ||| |||||||||| ||||||||||||||||||||| |||||||    
21203336 atcaagtaagttgttgattgtacaatttggttgttcacatatcatt 21203381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 22957083 - 22956978
Alignment:
208 tttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaatagcaaataagttgttggttgtacaatttggttgttcacgtatcatt 306  Q
    |||||||||||||| ||||   ||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||    
22957083 tttaattttgtgaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaatttggttatttacatatcatt 22956984  T
307 cctcaa 312  Q
     |||||    
22956983 tctcaa 22956978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 23831309 - 23831414
Alignment:
208 tttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaatagcaaataagttgttggttgtacaatttggttgttcacgtatcatt 306  Q
    |||||||||||||| ||||   ||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||    
23831309 tttaattttgtgaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaatttggttatttacatatcatt 23831408  T
307 cctcaa 312  Q
     |||||    
23831409 tctcaa 23831414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 281
Target Start/End: Original strand, 7045131 - 7045254
Alignment:
159 agagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattattaaa 257  Q
    ||||||||||||| | |||| ||||||||  ||||||||||||||||||| ||| ||||||| |||||  ||||||||| |||  ||||||||  |||||    
7045131 agagctatgttatgtgtacaactaaaatttgacaaccaatgcaacaacttataagtttgtgaggagcacagaaatcaaattcaaacaaaatatatttaaa 7045230  T
258 aatagcaaataagttgttggttgt 281  Q
    ||||| |||| | |||||||||||    
7045231 aatagtaaatgaattgttggttgt 7045254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 310
Target Start/End: Original strand, 9961152 - 9961297
Alignment:
166 tgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgaga-gcatggaaatcaaaatcatgcaaaatattattaaaaatagca 264  Q
    |||||||| |||| ||||||||||||||  |||| |||| | | |||  |||||||| ||| | ||||| ||||||  ||||| ||  | ||||||||||    
9961152 tgttatttgtacaactaaaattgaacaattaatgtaacaccatataacattgtgagaagcacgtaaatcgaaatcaatcaaaaaatattaaaaaatagca 9961251  T
265 aataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    |||||||||||||||||||||    | ||||||| |||||||||||    
9961252 aataagttgttggttgtacaaacgagatgttcacatatcattcctc 9961297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 281
Target Start/End: Original strand, 6266426 - 6266549
Alignment:
159 agagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattattaaa 257  Q
    ||||| ||||||||| |||| |||||||||||||||  || ||||||| |||||| |||||| ||||| | ||||| ||||||   |||| ||  | |||    
6266426 agagcaatgttatttgtacaactaaaattgaacaacttatacaacaacctttaatattgtgaggagcacgcaaatcgaaatcactaaaaaaatattaaaa 6266525  T
258 aatagcaaataagttgttggttgt 281  Q
    |||||||||  |||||||||||||    
6266526 aatagcaaaatagttgttggttgt 6266549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 33029769 - 33029650
Alignment:
166 tgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattattaaaa-atagc 263  Q
    ||||||||||||| | ||||||| ||||| || |||||| | | |||  |||||| ||||||| ||||| ||||||  ||||| || ||||||| |||||    
33029769 tgttatttatacaaccaaaattggacaactaacgcaacaccatataacattgtgatgagcatgtaaatcgaaatcaatcaaaaaat-attaaaacatagc 33029671  T
264 aaataagttgttggttgtaca 284  Q
    | |||||||||||||||||||    
33029670 agataagttgttggttgtaca 33029650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 34576144 - 34576271
Alignment:
156 ataagagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattatt 254  Q
    ||||||| | |||||| ||||||   ||||||||||||| ||||||||| ||||| ||  |||||| |||| | |||||||||||||  |||||||  |     
34576144 ataagagttgtgttatatatacaatcaaaattgaacaactaatgcaacaccttttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatatta 34576243  T
255 aaaaatagcaaataagttgttggttgta 282  Q
    |||||| |||||  ||||||| ||||||    
34576244 aaaaattgcaaaagagttgttagttgta 34576271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 33423685 - 33423777
Alignment:
190 acaaccaatgcaacaacttttaattttgtgag-agcatggaaatcaaaatcatgcaaaatattattaaaaatagcaaataagttgttggttgt 281  Q
    ||||||||| ||||||||  |||||||||||| ||   ||||||| ||||   |||||||||  | ||||||||||| |||||||||||||||    
33423685 acaaccaatacaacaactcataattttgtgagtagtgcggaaatcgaaattgggcaaaatatattaaaaaatagcaattaagttgttggttgt 33423777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 37819894 - 37819956
Alignment:
244 aaaatattattaaaaatagcaaataagttgttggttgtacaatttggttgttcacgtatcatt 306  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||  |||||||    
37819894 aaaatattattaaacatagcaaataaattgttggttgtacaatttagttgttcaaatatcatt 37819956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 284
Target Start/End: Complemental strand, 43899160 - 43899034
Alignment:
160 gagctatgttatttatacatctaaaattgaacaaccaatgcaacaacttttaattttgtga-gagcatggaaatcaaaatcatgcaaaatattatt-aaa 257  Q
    |||||||||||||| |||| | ||||||||||||| ||||||||| | ||||||  ||| | ||||| | ||||||||||||   |||| | |||| |||    
43899160 gagctatgttatttgtacaaccaaaattgaacaactaatgcaacaccctttaatactgtaaggagcacgcaaatcaaaatcaataaaaaaaatattaaaa 43899061  T
258 aatagcaaataagttgttggttgtaca 284  Q
    ||||||||| |||||||||||||||||    
43899060 aatagcaaagaagttgttggttgtaca 43899034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 24512022 - 24511976
Alignment:
264 aaataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||    
24512022 aaataagttgttggttgtacaatttggttgttcagatatcattcctc 24511976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 24512369 - 24512327
Alignment:
160 gagctatgttatttatacatctaaaattgaacaaccaatgcaa 202  Q
    |||||||||||||| ||||| |||||||| |||||||||||||    
24512369 gagctatgttatttgtacatttaaaattggacaaccaatgcaa 24512327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 36796127 - 36796082
Alignment:
263 caaataagttgttggttgtacaatttggttgttcacgtatcattcc 308  Q
    |||||||||||||||||||| ||||| ||||||||| ||| |||||    
36796127 caaataagttgttggttgtataatttagttgttcacctataattcc 36796082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 5857526 - 5857570
Alignment:
266 ataagttgttggttgtacaatttggttgttcacgtatcattcctc 310  Q
    |||||||||||||||||||| |||||| |||||| ||| ||||||    
5857526 ataagttgttggttgtacaaattggttattcacgaatctttcctc 5857570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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