View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15110_high_10 (Length: 300)
Name: NF15110_high_10
Description: NF15110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15110_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 55178609 - 55178896
Alignment:
| Q |
1 |
cttcatgtatggtaaactagtactaattagcagcagtgatgttatgagtctgacctgaagagaattgacaagtgcaagagttgagaacctcaaagataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178609 |
cttcatgtatggtaaactagtactaattagcagcagtgatgttatgagtccgacctgaagagaattgacaagtgcaagagttgagaacctcaaagataaa |
55178708 |
T |
|
| Q |
101 |
ccacttgcagctactgaaactaataacatttttatagctctggccctcaatttgagatgaactgtgtcgattgttattatatttgtgtgttgagcgatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178709 |
ccacttgcagctactgaaactaataacatttttatagctctggccctcaatttgagatgaactgtgtcgattgttattatatttgtgtgttgagcgatcc |
55178808 |
T |
|
| Q |
201 |
ggtaagttcattacccattgtacaacagacatgtcccttgaaatttctgtatgcatcctgcggagaagtggccaaccaagcttctgtg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178809 |
ggtaagttcattacccattgtacaacagacatgtcccttgaaatttctgtatgcatcctgcggagaagtggccaaccaagcttctgtg |
55178896 |
T |
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