View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15110_high_3 (Length: 358)
Name: NF15110_high_3
Description: NF15110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15110_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 2298782 - 2298448
Alignment:
| Q |
23 |
atatgttagagtgtgagtttgaatccacagttttccacttctctaagttaagtgtgattgagtgnnnnnnnnttaatagcatacatttgaccccctaaaa |
122 |
Q |
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| T |
2298782 |
atatgttagagtgtgagtttgaatccacatttttccacttctctaagttaagtgtgattgagtgaaaaaaa-ttaatagcatacatttgacccccaaaaa |
2298684 |
T |
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| Q |
123 |
aagatagaagcataacatttaccttcttcaccatcaaaactatggtaagtgaaggtaacactgggactagaaccttctttttgataccttttaactttcc |
222 |
Q |
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| T |
2298683 |
aagatagaagcataacatttaccttcttcaccatcaaaactatggtaagtgaaggtaacactgggactaggaccttctttttgataccttttaactttcc |
2298584 |
T |
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| Q |
223 |
agataacatcactgaatcctcttgacccacctaattagcaaatgagaaannnnnnnatggacattataattatggtataaacaaattatttccataacca |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2298583 |
agataacatcactgaatcctcttgacccacctaattagcaaatgagaaatttttttatggacattataattatggtataaacaaattatttccataacca |
2298484 |
T |
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| Q |
323 |
caaagtaaatattaaacataccatgaagtgtattgt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2298483 |
caaagtaaatattaaacataccatgaagtgtattgt |
2298448 |
T |
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