View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15110_high_4 (Length: 349)
Name: NF15110_high_4
Description: NF15110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15110_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 3 - 348
Target Start/End: Original strand, 21218868 - 21219213
Alignment:
| Q |
3 |
aaaatatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaagacaaaaaaca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21218868 |
aaaatatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaagacaaaaaaca |
21218967 |
T |
|
| Q |
103 |
aataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacaaaacaataaataaaatgatccattaaccagg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21218968 |
aataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacagaacaataaataaaatgatccattaaccagg |
21219067 |
T |
|
| Q |
203 |
atatatcagcacagctgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagtactatagttg |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21219068 |
atatatcagcacagttgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagtactatagttg |
21219167 |
T |
|
| Q |
303 |
cacaaaacaactatttagtaaaatataatcaagattccaggagtat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21219168 |
cacaaaacaactatttagtaaaatataatcaagattccaggagtat |
21219213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University