View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15110_low_1 (Length: 327)
Name: NF15110_low_1
Description: NF15110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15110_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 83 - 312
Target Start/End: Complemental strand, 41086555 - 41086326
Alignment:
| Q |
83 |
ggttctgtttggtctaattcatttttgaaaaagtgatttgaaattcaattctaatgtctttttacaaaacaacattaaaaaacattcaataatattcaat |
182 |
Q |
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| T |
41086555 |
ggttctgtttggtttggttcatttttgaaaaagtgatttgaaatccaattctaatgtctttttacaaaacaacattaaaaaacattcaataatattcaat |
41086456 |
T |
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| Q |
183 |
cttttatggtatctaannnnnnngaatcggattgtggttttattctggatcaatttaaatttgaacactctatctacaacatcttagtttatgagttcaa |
282 |
Q |
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| T |
41086455 |
cttttgtggtatctaatttttttgaatcgagttgtggttttattctggatcaatttaaatttgaacactctatctacaacatcttagtttatgagttcaa |
41086356 |
T |
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| Q |
283 |
tcattgatgtatttttcaatcctcattttt |
312 |
Q |
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| T |
41086355 |
tcattgatgtatttttcaaccctcattttt |
41086326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 83 - 258
Target Start/End: Original strand, 104557 - 104732
Alignment:
| Q |
83 |
ggttctgtttggtctaattcatttttgaaaaagtgatttgaaattcaattctaatgtctttttacaaaacaacattaaaaaacattcaataatattcaat |
182 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
104557 |
ggttctgtttggtttggttcatttttgaaaaagtgatttgaaatccaattctaatgtctttttacaaaacaacattaaaaaacattcaataatattcaat |
104656 |
T |
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| Q |
183 |
cttttatggtatctaannnnnnngaatcggattgtggttttattctggatcaatttaaatttgaacactctatcta |
258 |
Q |
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| T |
104657 |
cttttgtggtatctaatttttttgaatcgacttgtggttttattctggatcaatttaaatttgaacactctatcta |
104732 |
T |
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