View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15111_high_2 (Length: 544)

Name: NF15111_high_2
Description: NF15111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15111_high_2
NF15111_high_2
[»] chr3 (7 HSPs)
chr3 (1-527)||(10980965-10981491)
chr3 (366-527)||(35326940-35327100)
chr3 (468-519)||(2439496-2439547)
chr3 (462-518)||(32073617-32073673)
chr3 (468-519)||(34935095-34935146)
chr3 (468-514)||(8968401-8968447)
chr3 (468-514)||(9734465-9734511)
[»] chr4 (10 HSPs)
chr4 (310-519)||(6540420-6540629)
chr4 (32-181)||(6539938-6540090)
chr4 (365-521)||(38768723-38768879)
chr4 (369-520)||(12601876-12602027)
chr4 (468-514)||(25553255-25553301)
chr4 (462-518)||(13200840-13200896)
chr4 (462-518)||(47782991-47783047)
chr4 (483-518)||(4946703-4946738)
chr4 (494-527)||(16549376-16549409)
chr4 (210-287)||(38768957-38769034)
[»] chr6 (10 HSPs)
chr6 (369-527)||(33132280-33132438)
chr6 (372-527)||(17812152-17812307)
chr6 (468-518)||(21698716-21698766)
chr6 (468-518)||(30063676-30063726)
chr6 (462-518)||(13434353-13434409)
chr6 (462-518)||(15950800-15950856)
chr6 (468-508)||(7090441-7090481)
chr6 (478-518)||(13672240-13672280)
chr6 (461-521)||(20773617-20773677)
chr6 (465-517)||(30449523-30449575)
[»] chr8 (2 HSPs)
chr8 (369-527)||(14848418-14848576)
chr8 (468-519)||(28161966-28162017)
[»] chr7 (9 HSPs)
chr7 (369-527)||(15846913-15847071)
chr7 (369-527)||(15856123-15856281)
chr7 (369-527)||(6621359-6621517)
chr7 (408-527)||(36307947-36308064)
chr7 (465-517)||(39970000-39970052)
chr7 (413-520)||(21103608-21103715)
chr7 (468-519)||(21824383-21824434)
chr7 (468-514)||(665004-665050)
chr7 (462-518)||(29526828-29526884)
[»] chr5 (7 HSPs)
chr5 (369-527)||(11123504-11123662)
chr5 (468-517)||(36961986-36962035)
chr5 (468-517)||(42765285-42765334)
chr5 (468-518)||(19609166-19609216)
chr5 (460-519)||(13559975-13560034)
chr5 (483-518)||(19237678-19237713)
chr5 (210-287)||(15824585-15824662)
[»] chr2 (7 HSPs)
chr2 (369-527)||(17102773-17102931)
chr2 (369-527)||(32019507-32019665)
chr2 (407-527)||(19143330-19143450)
chr2 (468-517)||(27072368-27072417)
chr2 (468-519)||(20471182-20471233)
chr2 (468-518)||(31426455-31426505)
chr2 (469-514)||(21085012-21085057)
[»] chr1 (12 HSPs)
chr1 (369-527)||(17431070-17431228)
chr1 (369-527)||(44002153-44002311)
chr1 (265-512)||(6593335-6593583)
chr1 (369-527)||(3322010-3322168)
chr1 (468-518)||(4179977-4180027)
chr1 (465-518)||(18984745-18984798)
chr1 (462-518)||(26418798-26418854)
chr1 (462-518)||(32108426-32108482)
chr1 (468-519)||(22161757-22161808)
chr1 (469-514)||(29601015-29601060)
chr1 (462-518)||(11420371-11420427)
chr1 (485-521)||(31592311-31592347)
[»] scaffold1689 (1 HSPs)
scaffold1689 (468-519)||(919-970)
[»] scaffold0114 (1 HSPs)
scaffold0114 (468-519)||(11542-11593)
[»] scaffold0445 (1 HSPs)
scaffold0445 (468-519)||(14033-14084)
[»] scaffold0071 (1 HSPs)
scaffold0071 (462-518)||(52676-52732)


Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 10981491 - 10980965
Alignment:
Q  1 tttggaggaatgaaactatattgcggacaacagtttgtgagaggggtaggaatctcctcacgagttggcaaaatgtgcaaacgtgtcgtaatggagcgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  10981491 tttggaggaatgaaactatattgcggacaacagtttgtgagaggggtaggaatctcctcacgagttggcaaaatgcgcaaacatgtcgtaatggagcgac 10981392  T
Q  101 tgtacagcagcaacattttgctaatcatcggtggaagaaaccggatttaggaaggtacaaatgtaacgttgatgcagctttttgtaaggcaagcaacaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10981391 tgtacagcagcaacattttgctaatcatcggtggaagaaaccggatttaggaaggtacaaatgtaacgttgatgcagctttttgtaaggtaagcaacaga 10981292  T
Q  201 gccgggataggtatatgcattagggatgatcaagggagtttcgtattggctaagactgaatggttttcacccattcttaaagttgatattggagtatctt 300  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10981291 gtcgggataggtatatgcattagggatgatcaagggagtttcgtattggctaagactgaatggttttcacccattcttaaagttgatattggagaatctt 10981192  T
Q  301 taggtctactgttagctataagatggcttaaggagttgcatattaataatgtggtatttgagtctgattctaagagagtagttgatagtttccataacaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10981191 taggtctactgttagctataagatggcttaaggagttgcatattaataaggtagtatttgagtctgattctaagagagtagttgatagtttccataacaa 10981092  T
Q  401 tcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttcacaaactcgcaggttgagtttattaggagacaa 500  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10981091 tcgtaaagatgaatctgattttggagcaattattagagagtgtagaaattcattctcatcttttttcacaaactcgcaggttgagtttattaggagacaa 10980992  T
Q  501 gcaaatgaggttgctcatagtcttgct 527  Q
     ||||| ||||||||||||||||||||    
T  10980991 acaaataaggttgctcatagtcttgct 10980965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 366 - 527
Target Start/End: Original strand, 35326940 - 35327100
Alignment:
Q  366 gattctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttt 465  Q
    ||||| |||||  |||| ||||||||||||| || | | || |||| ||||||||| ||||||||||| ||||| ||||| ||| | |||||||| ||||    
T  35326940 gattccaagaggatagtagatagtttccatagcactagaaatgatgtatctgatttaggagctattatcagagaatgtaggaatactttctcatcatttt 35327039  T
Q  466 tcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    ||||||||||  |||| ||||||||||||| |||||| || |||||||||||||| ||||||    
T  35327040 tcacaaactc-aaggtagagtttattaggaaacaagctaacgaggttgctcatagacttgct 35327100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 2439496 - 2439547
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| ||||||||||||||||||||||    
T  2439496 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcata 2439547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Complemental strand, 32073673 - 32073617
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || ||||||| |||||| |||||||||||||||||||||    
T  32073673 tttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcat 32073617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 34935095 - 34935146
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| ||||||||||||||||| ||||    
T  34935095 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacata 34935146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 8968447 - 8968401
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgc 514  Q
    |||||||| || || |||||||||||||| |||||||||||||||||    
T  8968447 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 8968401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 9734511 - 9734465
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgc 514  Q
    |||||||| || || |||||||||||||| |||||||||||||||||    
T  9734511 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 9734465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 310 - 519
Target Start/End: Original strand, 6540420 - 6540629
Alignment:
Q  310 tgttagctataagatggcttaaggagttgcatattaataatgtggtatttgagtctgattctaagagagtagttgatagtttccataacaatcgtaaaga 409  Q
    |||| ||||||||| |||| ||||| |||||||||||||||| |   |||||||  || ||||||||||||||  |||| |||||||  ||||| | |||    
T  6540420 tgtttgctataagacggctcaaggatttgcatattaataatgggacttttgagttagactctaagagagtagtcaatagcttccatagtaatcgcagaga 6540519  T
Q  410 tgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttcacaaactcgcaggttgagtttattaggagacaagcaaatgag 509  Q
    |||||| ||  |||||||||||||||||||||||||||||||||||||  | ||||||| ||||| | |||||||||||||||||||||||| |||||||    
T  6540520 tgaatcggagcttggagctattattagagagtgtagaaattcattctcgacatttttcaaaaacttgtaggttgagtttattaggagacaagtaaatgag 6540619  T
Q  510 gttgctcata 519  Q
    ||| ||||||    
T  6540620 gttactcata 6540629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 6539938 - 6540090
Alignment:
Q  32 agtttgtgagaggggtaggaatctcctcacgagttggcaaaatgtgcaaacgtgtcgtaatggagcgactgtacagcagcaacattttgctaatcatcgg 131  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||| | ||||| ||||||||||| ||||||| ||| ||| |     
T  6539938 agttggtgagaggggcaggaatctcctcatgagttggcaaaatgcgcaaacatgtcgtaatagcgcgacggtacagcagcagcattttgttaaccataga 6540037  T
Q  132 tggaagaaaccggattt-agga--aggtacaaatgtaacgttgatgcagcttt 181  Q
    | ||||||||| ||||| ||||  ||||||||||||||||| |||||||||||    
T  6540038 tagaagaaaccagatttaaggaggaggtacaaatgtaacgtcgatgcagcttt 6540090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 365 - 521
Target Start/End: Complemental strand, 38768879 - 38768723
Alignment:
Q  365 tgattctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatctttt 464  Q
    ||||||||||| ||| || ||||| | |||||  ||||||| ||||||||||||| |||||||||| || ||||| ||| |    |||||||| ||||||    
T  38768879 tgattctaagaaagtggtggatagctaccatagtaatcgtagagatgaatctgatattggagctatcatcagagaatgtcgttgatcattctcgtctttt 38768780  T
Q  465 ttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagt 521  Q
    || ||||||||  |||||||||||||||||||||| ||||||||  |||||||||||    
T  38768779 tttacaaactccgaggttgagtttattaggagacaggcaaatgatattgctcatagt 38768723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 369 - 520
Target Start/End: Complemental strand, 12602027 - 12601876
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| |||| || | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||| |||| |||||||    
T  12602027 tctaagagggtagtagatagttttcatagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactaccttcgcatcctttttca 12601928  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatag 520  Q
    |||||||   ||| |||||||||||||||||||||||| |||||||||||||    
T  12601927 caaactcaagggtagagtttattaggagacaagcaaataaggttgctcatag 12601876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 25553255 - 25553301
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgc 514  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||    
T  25553255 acaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 25553301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 13200840 - 13200896
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || ||||| |||||||| |||||||||||||||||||||    
T  13200840 tttttaacaaactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcat 13200896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 47782991 - 47783047
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || ||||||| |||||| |||||||||||||||||||||    
T  47782991 tttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcat 47783047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 518
Target Start/End: Complemental strand, 4946738 - 4946703
Alignment:
Q  483 gagtttattaggagacaagcaaatgaggttgctcat 518  Q
    |||||||||||||| |||||||||||||||||||||    
T  4946738 gagtttattaggaggcaagcaaatgaggttgctcat 4946703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 527
Target Start/End: Original strand, 16549376 - 16549409
Alignment:
Q  494 gagacaagcaaatgaggttgctcatagtcttgct 527  Q
    ||||||||||||||||||||||||||| ||||||    
T  16549376 gagacaagcaaatgaggttgctcatagacttgct 16549409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 38769034 - 38768957
Alignment:
Q  210 ggtatatgcattagggatgatcaagggagtttcgtattggctaagactgaatggttttcacccattcttaaagttgat 287  Q
    ||||||||||| |||||||| ||||| || |||||  | || || | |||||| |||||||| |||||||||||||||    
T  38769034 ggtatatgcatcagggatgagcaaggaagcttcgtgctagccaaaattgaatgattttcacctattcttaaagttgat 38768957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 33132438 - 33132280
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| |||| || | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||||||||||||||||    
T  33132438 tctaagagggtagtagatagttttcatagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttca 33132339  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  33132338 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 33132280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 372 - 527
Target Start/End: Original strand, 17812152 - 17812307
Alignment:
Q  372 aagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttcacaa 471  Q
    ||||| ||||| |||||||| || |||| | | || |||| ||||||||| |||||||| || ||||| | ||| | | | |||||||||||||||||||    
T  17812152 aagagggtagtagatagttttcacaacactagaaatgatgtatctgatttaggagctatcatcagagaatttaggactaccttctcatcttttttcacaa 17812251  T
Q  472 actcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    ||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  17812252 actcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 17812307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 21698716 - 21698766
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    |||||||| || || |||||||||||||| |||||||||||||||||||||    
T  21698716 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcat 21698766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 30063726 - 30063676
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    |||||||| || || |||||||||||||| |||||||||||||||||||||    
T  30063726 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcat 30063676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 13434353 - 13434409
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || ||||||||||||||||||||| |||| ||| ||||||||    
T  13434353 tttttaacaaactctcatgttgagtttattaggagacaatcaaaagagattgctcat 13434409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 15950800 - 15950856
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || ||||||| |||||| |||||||||||||||||||||    
T  15950800 tttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcat 15950856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 7090481 - 7090441
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatga 508  Q
    |||||||| || ||||||||||||||||| |||||||||||    
T  7090481 acaaactctcatgttgagtttattaggaggcaagcaaatga 7090441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 518
Target Start/End: Original strand, 13672240 - 13672280
Alignment:
Q  478 aggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    |||||||||||| ||||||||||||||| ||||| ||||||    
T  13672240 aggttgagtttaataggagacaagcaaacgaggtcgctcat 13672280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 521
Target Start/End: Original strand, 20773617 - 20773677
Alignment:
Q  461 ttttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagt 521  Q
    |||||| ||||||||  ||||||||||||||| || ||||| | ||||||||| |||||||    
T  20773617 tttttttacaaactcttaggttgagtttattatgaaacaagtatatgaggttgttcatagt 20773677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 517
Target Start/End: Complemental strand, 30449575 - 30449523
Alignment:
Q  465 ttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctca 517  Q
    |||||||||||| |||||||||||| || |  ||||||||||||||| |||||    
T  30449575 ttcacaaactcgaaggttgagtttaatatgcaacaagcaaatgaggtagctca 30449523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 14848576 - 14848418
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| || | || | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||||||||||||||||    
T  14848576 tctaagagggtagtagatagttttcacagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttca 14848477  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  14848476 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 14848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 28162017 - 28161966
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| ||||||||||||||||| ||||    
T  28162017 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacata 28161966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 15847071 - 15846913
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| || | || | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||||||||||||||||    
T  15847071 tctaagagggtagtagatagttttcacagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactaccttctcatcttttttca 15846972  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  15846971 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 15846913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 15856281 - 15856123
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| || | || | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||||||||||||||||    
T  15856281 tctaagagggtagtagatagttttcacagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactaccttctcatcttttttca 15856182  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  15856181 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 15856123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 6621517 - 6621359
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| || | || | | || |||| ||||||||| |||||||| || ||||| ||||  | | | ||||||||||||||||    
T  6621517 tctaagagggtagtagatagttttcacagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtatgactaccttctcatcttttttca 6621418  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  6621417 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 6621359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 408 - 527
Target Start/End: Original strand, 36307947 - 36308064
Alignment:
Q  408 gatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttcacaaactcgcaggttgagtttattaggagacaagcaaatg 507  Q
    |||| ||||||||| |||||||| || ||||| ||||| | | |||||||||||||||||||||||  | |  | |||||||||||||||||||||||||    
T  36307947 gatgtatctgatttaggagctatcatcagagaatgtaggactacattctcatcttttttcacaaacaagga--tagagtttattaggagacaagcaaatg 36308044  T
Q  508 aggttgctcatagtcttgct 527  Q
    ||||||||||||| ||||||    
T  36308045 aggttgctcatagacttgct 36308064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 517
Target Start/End: Original strand, 39970000 - 39970052
Alignment:
Q  465 ttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctca 517  Q
    ||||||||||| | ||||||||||| |||| ||||||||||||||||||||||    
T  39970000 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttgctca 39970052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 520
Target Start/End: Complemental strand, 21103715 - 21103608
Alignment:
Q  413 atctgattttggagctattattagagagtgtagaaattcattctcatcttttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggtt 512  Q
    ||||||||| |||||||| || ||||| | ||| | | | |||| ||| ||||||||||| ||    || || |||||||||||||||||||||||||||    
T  21103715 atctgatttaggagctatcatcagagaatctaggactactttctaatcctttttcacaaaatcaagagtagattttattaggagacaagcaaatgaggtt 21103616  T
Q  513 gctcatag 520  Q
    ||||||||    
T  21103615 gctcatag 21103608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 21824383 - 21824434
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| ||||||||||||||||||||||    
T  21824383 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcata 21824434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 665050 - 665004
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgc 514  Q
    |||||||| || || ||||||||||||||||||||||||||||||||    
T  665050 acaaactctcatgtcgagtttattaggagacaagcaaatgaggttgc 665004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 29526828 - 29526884
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || ||||||| |||||| |||||||||||||||||||||    
T  29526828 tttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcat 29526884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 527
Target Start/End: Original strand, 11123504 - 11123662
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| |||||  ||||||| || |||| | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||||||||||||||||    
T  11123504 tctaagagggtagtatatagttttcacaacactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttca 11123603  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  11123604 caaactcaagggtagagtttattaggagacaagcaaatgaggttgttcatagtcttgct 11123662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 468 - 517
Target Start/End: Complemental strand, 36962035 - 36961986
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctca 517  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  36962035 acaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 36961986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 42765285 - 42765334
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctca 517  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  42765285 acaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 42765334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 19609216 - 19609166
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    |||||||| || || |||||||||||||| |||||||||||||||||||||    
T  19609216 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcat 19609166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 13559975 - 13560034
Alignment:
Q  460 cttttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    ||||||||||||||||  | ||||||||||||||||| ||||  |||||||||| |||||    
T  13559975 cttttttcacaaactctaatgttgagtttattaggaggcaagtcaatgaggttgttcata 13560034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 518
Target Start/End: Original strand, 19237678 - 19237713
Alignment:
Q  483 gagtttattaggagacaagcaaatgaggttgctcat 518  Q
    |||||||||||| |||||||||||||||||||||||    
T  19237678 gagtttattaggcgacaagcaaatgaggttgctcat 19237713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 15824662 - 15824585
Alignment:
Q  210 ggtatatgcattagggatgatcaagggagtttcgtattggctaagactgaatggttttcacccattcttaaagttgat 287  Q
    ||||||||||| ||||| |||||||| || ||||| || || || ||  ||||| |||||||||| ||||||||||||    
T  15824662 ggtatatgcatcagggacgatcaaggaagcttcgttttagcaaaaacaaaatggatttcacccatccttaaagttgat 15824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 17102931 - 17102773
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| || | || | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||||||||||||||||    
T  17102931 tctaagagggtagtagatagttttcacagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactaccttctcatcttttttca 17102832  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  17102831 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 17102773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 32019665 - 32019507
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| || | || | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||||||||||||||||    
T  32019665 tctaagagggtagtagatagttttcacagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttca 32019566  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  32019565 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 32019507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 527
Target Start/End: Original strand, 19143330 - 19143450
Alignment:
Q  407 agatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttcacaaactcgcaggttgagtttattaggagacaagcaaat 506  Q
    ||||||||| ||| ||||||||||||||||||| |||  ||||  ||| || ||||| || ||||||||| || |  ||||||||| ||||||||| |||    
T  19143330 agatgaatcggatcttggagctattattagagaatgtgaaaatatattatcgtctttctttacaaactcgaagatgaagtttattaagagacaagctaat 19143429  T
Q  507 gaggttgctcatagtcttgct 527  Q
    |||||  ||||||||||||||    
T  19143430 gaggtatctcatagtcttgct 19143450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 27072368 - 27072417
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctca 517  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  27072368 acaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 27072417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 20471182 - 20471233
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| ||||||||||||||||||||||    
T  20471182 acaaactctcatgtagagtttattaggaggcaagcaaatgaggttgctcata 20471233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 31426455 - 31426505
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    |||||||| || || |||||||||| ||| |||||||||||||||||||||    
T  31426455 acaaactctcatgtcgagtttattaagaggcaagcaaatgaggttgctcat 31426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 21085057 - 21085012
Alignment:
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgc 514  Q
    ||||||| || || |||||||||||||| |||||||||||||||||    
T  21085057 caaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 21085012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 527
Target Start/End: Original strand, 17431070 - 17431228
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| || | || | | || |||| ||||||||| |||||||| || ||||| ||||| | | | ||||||||||||||||    
T  17431070 tctaagagggtagtagatagttttcacagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttca 17431169  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  17431170 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 17431228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 369 - 527
Target Start/End: Original strand, 44002153 - 44002311
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    |||||||| ||||| |||||||| || | || | | || |||| ||||||||| |||||||| || ||||| ||||  | | | ||||||||||||||||    
T  44002153 tctaagagggtagtagatagttttcacagcactagaaatgatgtatctgatttaggagctatcatcagagaatgtatgactaccttctcatcttttttca 44002252  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  44002253 caaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgct 44002311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 265 - 512
Target Start/End: Original strand, 6593335 - 6593583
Alignment:
Q  265 tttcacccattcttaaagttgatattggagtatctttaggtctactgttagctataagatggcttaaggagttgcatattaataatgtggtatttgagtc 364  Q
    |||||||||| || |||||||||   ||||   |||||||||||||||| ||||| |||||| | ||||| |||||||||||||||| |   ||| |||     
T  6593335 tttcacccatcctaaaagttgatgaaggagaggctttaggtctactgttcgctatcagatggttgaaggatttgcatattaataatgcgacttttaagtt 6593434  T
Q  365 tgattctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatctttt 464  Q
     || |||| |||||||||||||||||||||||  | || |||  |||||||| |  |||||||  |||| ||||| |||||||||||| || | ||||||    
T  6593435 ggactctacgagagtagttgatagtttccatagtagtcttaagaatgaatctaaacttggagcacttataagagaatgtagaaattcactcccgtctttt 6593534  T
Q  465 ttcacaaactcgcagg-ttgagtttattaggagacaagcaaatgaggtt 512  Q
    |||| |||||  |||| |||| ||||||| || |||| |||||||||||    
T  6593535 ttcaaaaactttcaggtttgaatttattatgatacaaacaaatgaggtt 6593583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 369 - 527
Target Start/End: Original strand, 3322010 - 3322168
Alignment:
Q  369 tctaagagagtagttgatagtttccataacaatcgtaaagatgaatctgattttggagctattattagagagtgtagaaattcattctcatcttttttca 468  Q
    ||||| |||||||| |||||||| || || | | | || |||| |||||||||  ||||||| || ||||| ||||| | | | ||||||||||||||||    
T  3322010 tctaatagagtagtagatagttttcacaatactagaaatgatgtatctgatttatgagctatcatcagagaatgtaggactaccttctcatcttttttca 3322109  T
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcatagtcttgct 527  Q
    |||||||  |||| ||||||||||||||||||| ||||||| |||||||||| ||||||    
T  3322110 caaactcaaaggtagagtttattaggagacaagaaaatgagattgctcatagacttgct 3322168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 4179977 - 4180027
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    |||||||| || || |||||||||||||| |||||||||||||||||||||    
T  4179977 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcat 4180027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 18984798 - 18984745
Alignment:
Q  465 ttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||||||||| | ||| ||||||||| ||||||||||| ||||||||||||||    
T  18984798 ttcacaaactctcgggtggagtttattcggagacaagcagatgaggttgctcat 18984745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Complemental strand, 26418854 - 26418798
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || ||||||| |||||| |||||||||||||||||||||    
T  26418854 tttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcat 26418798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 32108426 - 32108482
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || ||||||| |||||| |||||||||||||||||||||    
T  32108426 tttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcat 32108482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 22161757 - 22161808
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| ||||| ||||||||||||||||    
T  22161757 acaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcata 22161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 29601015 - 29601060
Alignment:
Q  469 caaactcgcaggttgagtttattaggagacaagcaaatgaggttgc 514  Q
    ||||||| || || |||||||||||||| |||||||||||||||||    
T  29601015 caaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 29601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 518
Target Start/End: Complemental strand, 11420427 - 11420371
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || |||||||||||||| |||| ||||||||||| ||||    
T  11420427 tttttaacaaactctcatgtcgagtttattaggaggcaagtaaatgaggttgttcat 11420371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 31592311 - 31592347
Alignment:
Q  485 gtttattaggagacaagcaaatgaggttgctcatagt 521  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  31592311 gtttattaggagacaagccaatgaagttgctcatagt 31592347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 919 - 970
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| ||||||||||||||||||||||    
T  919 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcata 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 11593 - 11542
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| ||||||||||||||||||||||    
T  11593 acaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcata 11542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 14084 - 14033
Alignment:
Q  468 acaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcata 519  Q
    |||||||| || || |||||||||||||| |||| |||||||||||||||||    
T  14084 acaaactctcatgtcgagtttattaggaggcaagaaaatgaggttgctcata 14033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 52676 - 52732
Alignment:
Q  462 tttttcacaaactcgcaggttgagtttattaggagacaagcaaatgaggttgctcat 518  Q
    ||||| |||||||| || || |||||||||||||| ||||||||||| |||| ||||    
T  52676 tttttaacaaactctcatgtcgagtttattaggaggcaagcaaatgacgttgttcat 52732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University