View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15111_high_5 (Length: 236)
Name: NF15111_high_5
Description: NF15111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15111_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26209170 - 26208953
Alignment:
| Q |
1 |
ttgataaagtgatttgataccttaatttatatcacatgtttgttttattattaaacgtacggatatttgattttggaaatttgtagccnnnnnnnaggct |
100 |
Q |
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| T |
26209170 |
ttgataaagtgatttgataccttaatttatatcacatgtttgttttattattaaacgtaggaatatttgattttggaaatttgtagcctttttttaggct |
26209071 |
T |
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| Q |
101 |
aaaaaatatcaaatttttgtcctcgtgaatttaactcagttgctctaaatagtgtatagtatatgtttgcttgcacgtttgcaagctccgaacatgcttt |
200 |
Q |
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| T |
26209070 |
aaaaaatatcaaatttttgt--tcg-gaatttaactcagttggtatgaataatgtatagtatatgtttggttgcacgtttgcaagctccaaacgtgcttt |
26208974 |
T |
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| Q |
201 |
ttcagtcccaaacgtggtttg |
221 |
Q |
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|||||||||||||| |||||| |
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| T |
26208973 |
ttcagtcccaaacgcggtttg |
26208953 |
T |
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Back To:
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 39635820 - 39635882
Alignment:
| Q |
159 |
gtatatgtttgcttgcacgtttgcaagctccgaacatgctttttcagtcccaaacgtggtttg |
221 |
Q |
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| T |
39635820 |
gtatatgtttggttgcacgtttgcaagctccaaacgtgcttttgcagtcccaaacgcggtttg |
39635882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 3623515 - 3623452
Alignment:
| Q |
158 |
agtatatgtttgcttgcacgtttgcaagctccgaacatgctttttcagtcccaaacgtggtttg |
221 |
Q |
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||||||| |||| ||||||||||||||||||| ||| || |||| |||||||||||| |||||| |
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| T |
3623515 |
agtatatatttggttgcacgtttgcaagctccaaacgtgtttttgcagtcccaaacgcggtttg |
3623452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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