View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15111_high_6 (Length: 216)

Name: NF15111_high_6
Description: NF15111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15111_high_6
NF15111_high_6
[»] chr4 (3 HSPs)
chr4 (2-205)||(21635985-21636188)
chr4 (2-51)||(48336328-48336377)
chr4 (2-51)||(53337435-53337484)
[»] chr8 (3 HSPs)
chr8 (2-51)||(8587235-8587284)
chr8 (2-51)||(3304294-3304343)
chr8 (2-51)||(44498203-44498252)
[»] chr6 (4 HSPs)
chr6 (2-62)||(7596982-7597042)
chr6 (2-48)||(33393165-33393211)
chr6 (2-51)||(6068631-6068680)
chr6 (2-51)||(33052810-33052859)
[»] chr1 (1 HSPs)
chr1 (12-51)||(44953079-44953118)
[»] scaffold0464 (1 HSPs)
scaffold0464 (2-51)||(6147-6196)
[»] scaffold0204 (1 HSPs)
scaffold0204 (2-51)||(23850-23899)
[»] chr7 (1 HSPs)
chr7 (2-51)||(4790313-4790362)
[»] chr5 (2 HSPs)
chr5 (2-51)||(37642019-37642068)
chr5 (2-50)||(2629561-2629609)
[»] chr3 (2 HSPs)
chr3 (2-51)||(8437490-8437539)
chr3 (2-51)||(34988140-34988189)
[»] chr2 (1 HSPs)
chr2 (2-51)||(41492912-41492961)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 21636188 - 21635985
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaattgtattggaggaagcatgtgttaagatatatgttgttaacnnnnnnnnnc 101  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||         |    
T  21636188 tttttaacctgatacatcaacttttatcgactcaaatttttcttataaattgtatcggaggaaatatgtgttaagatatatgttgttaactttttttt-c 21636090  T
Q  102 tccaaaaagtttaatggttaaactcaccc-ataattacaaagaaaaaagcttattgtgcattcgaaccaacacaagaattaattaatgttgctgagtcat 200  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21636089 tccaaaaagtttaatggttaaactcaccccataattataaagaaaaaagcttattgtgcattcgaaccaacacaagaattaattaatgttgctgagtcat 21635990  T
Q  201 ttcat 205  Q
    |||||    
T  21635989 ttcat 21635985  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 48336328 - 48336377
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||| | ||| |||| |||||||||||||    
T  48336328 tttttaactagatacatcaacttttgttgacccaaaattttcttataaat 48336377  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 53337435 - 53337484
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||||    
T  53337435 tttttaactagatacatcaacttttattgacccaaaattctcttataaat 53337484  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 8587235 - 8587284
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||    
T  8587235 tttttaactagatacatcaacttttattgactcaagtttctcttataaat 8587284  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 3304343 - 3304294
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||| | ||| |||| |||||||||||||    
T  3304343 tttttaactagatacatcaacttttgttgacccaaaattttcttataaat 3304294  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 44498252 - 44498203
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||||    
T  44498252 tttttaactagatacatcaacttttattgacccaaaattctcttataaat 44498203  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 7597042 - 7596982
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaattgtattggagg 62  Q
    |||||||||  |||||||||||||||| ||||||||||| || ||||||| | ||||||||    
T  7597042 tttttaactaaatacatcaacttttattgactcaaatttctcctataaataggattggagg 7596982  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 33393211 - 33393165
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttata 48  Q
    |||| |||| ||||||||||||||||| ||||||||||| |||||||    
T  33393211 ttttaaactagatacatcaacttttattgactcaaatttctcttata 33393165  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 6068631 - 6068680
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||| | |||||||| || ||||||||||    
T  6068631 tttttaactagatacatcaacttttgttgactcaaaattctcttataaat 6068680  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 33052859 - 33052810
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||||    
T  33052859 tttttaactagatacatcaacttttattgacccaaaattctcttataaat 33052810  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 44953118 - 44953079
Alignment:
Q  12 gatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  44953118 gatacatcaacttttattgactcaaatgtttcttataaat 44953079  T

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Target: scaffold0464 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 6196 - 6147
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||| | ||| |||| |||||||||||||    
T  6196 tttttaactagatacatcaacttttgttgacccaaaattttcttataaat 6147  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 23850 - 23899
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||| | ||| |||| |||||||||||||    
T  23850 tttttaactagatacatcaacttttgttgacccaaaattttcttataaat 23899  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 4790313 - 4790362
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||||    
T  4790313 tttttaactagatacatcaacttttattgacccaaaattctcttataaat 4790362  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 37642019 - 37642068
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||||    
T  37642019 tttttaactagatacatcaacttttattgacccaaaattctcttataaat 37642068  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 2629609 - 2629561
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaa 50  Q
    |||||||||  ||||||||| |||||| ||||||||| |||||||||||    
T  2629609 tttttaactatatacatcaaattttattgactcaaatgtttcttataaa 2629561  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 8437490 - 8437539
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||| | |||||||| || ||||||||||    
T  8437490 tttttaactagatacatcaacttttgttgactcaaaattctcttataaat 8437539  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 34988140 - 34988189
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| |||||||||||| || | ||||||||| ||||||||||||    
T  34988140 tttttaactagatacatcaactattgttgactcaaatatttcttataaat 34988189  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 41492961 - 41492912
Alignment:
Q  2 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 51  Q
    ||||||||| ||||||||||||||| | ||| ||||||| ||||||||||    
T  41492961 tttttaactagatacatcaacttttgttgacccaaatttctcttataaat 41492912  T

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