View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15111_low_1 (Length: 607)
Name: NF15111_low_1
Description: NF15111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15111_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 241 - 589
Target Start/End: Original strand, 28502104 - 28502452
Alignment:
| Q |
241 |
cttcaaaagaaatgatattttaatatcaaaatcaaacaatannnnnnnncatcaaacactatacaataactttatattcataacagtaaatcctatccaa |
340 |
Q |
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| T |
28502104 |
cttcaaaagaaatgatattttaatatcaaaatcaaacaatattttttttcatcaaacactatacaataactttatattcataacagtaaatcctatccaa |
28502203 |
T |
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| Q |
341 |
cagatatttttgaagatattttaaacgtgatgta-taaagtgaaatataatgtataaaaatatttctgatggagagagagaag--ggagaggcattgatt |
437 |
Q |
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||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28502204 |
cagatatttttgaagatatttgaaacgtgatataataaagtgaaatataatgtataataatatttctgatggagagagagaagagggagaggcattgatt |
28502303 |
T |
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| Q |
438 |
tgattcattcattgatgaatgaaattagggagatggaagcatgagagagctgagagagggggagagtgtggggctggaattgtaagtgtgcgggacaagt |
537 |
Q |
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| T |
28502304 |
tgattcattcattgatgaatgaaattagggagatggaagaatgagag--ctgagagagggg-agagtgtggggctggaattgtaagtgtgcgggacaagt |
28502400 |
T |
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| Q |
538 |
ggggtacaagaacagaaacatagctaaaaacagactaaaatagtgtaatatt |
589 |
Q |
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| T |
28502401 |
ggggtacaaaaacagaaacatagctaaaaacagagtaaaatagtgtaatatt |
28502452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 28501411 - 28501509
Alignment:
| Q |
8 |
attatacttggaagattatttatgttgttgtgtgtggagatatttcttttttggtgttaatgttttggatatattttaatttaccaaaaaataaagata |
106 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28501411 |
attatacttgcaagattatttatgttgttgtgtgtggagatatttcttttttggttttaatgttttggatatattttaatttaccaaaaaataaagata |
28501509 |
T |
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