View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15111_low_5 (Length: 238)
Name: NF15111_low_5
Description: NF15111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15111_low_5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 46401607 - 46401376
Alignment:
| Q |
7 |
cacagagagtatgagcaagttgtgttttcccagatctgaatacataaagtgctattattagcataaacttcttctgaaactgaaaatgaataaaatctat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46401607 |
cacagagagtatgagcaagttgtgttttcccagatctgaatacataaagtgctattattagcataaacttcttctgaaactgaaaatgaataaaatctat |
46401508 |
T |
|
| Q |
107 |
ttgaaactagttacatgctgtattcataccggaattctccgaatgcttcagtaatcgacagtgtctcgattccacctttttcaaacattaagaagaaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46401507 |
ttgaaactagttacatgctgtattcataccggaattctccgaatgcttcagtaatcgacagtgtctcgattccacctttttcaaacattaagaagaaatt |
46401408 |
T |
|
| Q |
207 |
caaagagaaaataattacaaacatataggatt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
46401407 |
caaagagaaaataattacaaacatataggatt |
46401376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University