View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_high_10 (Length: 332)
Name: NF15112_high_10
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_high_10 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 43226026 - 43225720
Alignment:
| Q |
19 |
tgtgttaacttctttgttgcaggttacacttgcatctttaatcttttgagtcttttgtgttcaaaattgcaacaacctaaattatgttgcaatttaatca |
118 |
Q |
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| T |
43226026 |
tgtgttaacttctttgttgcaggttacacttgcatctttaatcttttg---------tgttcaaaattgcaacaacctaaattatgttgcaatttaatca |
43225936 |
T |
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| Q |
119 |
acttttcaatatagtgaaaa--ttaaaatgaattcttgacaaatatttagtgtatagtttgattgaaaaatgaatcatatttgtgagtatgcaactcaac |
216 |
Q |
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| T |
43225935 |
acttttcaatatagtgaaaaaattaaaatcaattcttgacaaatatttagtgtatagtttgattgataaatgaatcatatttgtgagtatgcaactcaac |
43225836 |
T |
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| Q |
217 |
atttgtcaatgctatcgaaataaataaa----taaaactaagcattaggtcatatgctaccannnnnnngaggtaagtaaaagtaattggaagttgaatt |
312 |
Q |
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| T |
43225835 |
atttgtcaatgctatcgaaataaataaataaataaaactaagcattaggtcatctgctaccatttttttgag----gtaaaggtaattggaagttgaatt |
43225740 |
T |
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| Q |
313 |
tggtttatgttaatattcta |
332 |
Q |
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| T |
43225739 |
tggtttatgttaatattcta |
43225720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 43258694 - 43258556
Alignment:
| Q |
103 |
tgttgcaatttaatcaacttttcaatatagtgaaaattaaaatgaattcttgacaaatatttagtgtat-agtttgattgaaaaatgaatcatatttgtg |
201 |
Q |
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| T |
43258694 |
tgttgcaatttaatcaactttt-aatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgattggaaaatgaatcatatttgcg |
43258596 |
T |
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| Q |
202 |
agtatgcaactcaacatttgtcaatgctatcgaaataaataaa |
244 |
Q |
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| T |
43258595 |
agtat---actcaacatttgtcaatgctttcgaaataaataaa |
43258556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 43254414 - 43254295
Alignment:
| Q |
130 |
tagtgaaaattaaaatgaattcttgacaaatatttagtgtata-gtttgattgaaaaatgaatcatatttgtgagtatgcaactcaacatttgtcaatgc |
228 |
Q |
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| T |
43254414 |
tagtgaaaattaaaattaattcttaacaaacatctagtgtataagtttgtttggaaaatgaatcatatttgtgagtat---actcaacatttgtcaatgc |
43254318 |
T |
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| Q |
229 |
tatcgaaataaataaataaaact |
251 |
Q |
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| T |
43254317 |
tttcgaaataaataaataaaact |
43254295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 43230042 - 43229923
Alignment:
| Q |
102 |
atgttgcaatttaatcaacttttcaatatagtgaaaattaaaatgaattcttgacaaatatttagtgtatagtttgattgaaaaatgaatcatatttgtg |
201 |
Q |
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| T |
43230042 |
atgttgcaatttaatcaactttt-aatg-agtgaagattaaaatggattctt---aaacatttaggatatagtttgattggaaaatgaatcatatttatg |
43229948 |
T |
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| Q |
202 |
agtatgcaactcaacatttgtcaat |
226 |
Q |
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| T |
43229947 |
agtatgcaactcaacatttgtcaat |
43229923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 43246820 - 43246665
Alignment:
| Q |
102 |
atgttgcaatttaatcaacttttcaatatagtgaaaattaaaatgaattcttgacaaatatttagtgtatagtttgattgaaaaatgaatcat------- |
194 |
Q |
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| T |
43246820 |
atgttacaatttaatcaattttt-aatg-agtgaagattaaactggattctt---aaacatttagtgtatagtttgattgaaaaatgaatcattatcatg |
43246726 |
T |
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| Q |
195 |
----atttgtgagtatgcaactcaacatttgtcaatgctatcgaaataaataaataaaact |
251 |
Q |
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| T |
43246725 |
agatatttatgagtatgcaactcaacatttgtcaatactttccaagtaaataaagaaaact |
43246665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 43253285 - 43253130
Alignment:
| Q |
102 |
atgttgcaatttaatcaacttttcaatatagtgaaaattaaaatgaattcttgacaaatatttagtgtatagtttgattgaaaaatgaatcat------- |
194 |
Q |
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| T |
43253285 |
atgttacaatttaatcaattttt-aatg-agtgaagattaaactggattctt---aaacatttagtgtatagtttgattgaaaaatgaatcattatcatg |
43253191 |
T |
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| Q |
195 |
----atttgtgagtatgcaactcaacatttgtcaatgctatcgaaataaataaataaaact |
251 |
Q |
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|||| ||||||||||||||||||||||||||| || || || |||||||| |||||| |
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| T |
43253190 |
agatatttatgagtatgcaactcaacatttgtcaatactttccaagtaaataaagaaaact |
43253130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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