View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_high_12 (Length: 324)
Name: NF15112_high_12
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 4686034 - 4686346
Alignment:
| Q |
1 |
tatatatagatatagatgtgaaaagtgaagaccctttttggtttggtatgaaagcaggtggtcgataattgcagctcaattgccaggaagaactgataat |
100 |
Q |
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| T |
4686034 |
tatatatagatatagatgtgaaaagtgaagaccctttttggtttggtatgaaagcaggtggtcgataattgcagctcaattgccaggaagaactgataat |
4686133 |
T |
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| Q |
101 |
gacataaagaactattggaatacaaggttgaaaaagaagcttttggggaaacaccgtaaagatcaacaacaacaagcacgtaatagaggaaataatggtg |
200 |
Q |
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| T |
4686134 |
gacataaagaactattggaatacaaggttgaaaaagaagcttttggggaaacaccgtaaagatcaacaacaacaagcacgtaatagaggaaataatggtg |
4686233 |
T |
|
| Q |
201 |
ctattgttaagcaagaaagcaataataatagagtgatgagtagtaatgaattttccttatcaaatttggttcaagaacaaccatatttaccacatgtcat |
300 |
Q |
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| T |
4686234 |
ctattgttaagcaagaaagcaataataatagagtgatgagtagtaatgaattttccttatcaaatttggttcaagaacaaccatatttaccacatgtcat |
4686333 |
T |
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| Q |
301 |
gcaacctatgcta |
313 |
Q |
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| T |
4686334 |
gcaacctttgcta |
4686346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 49848599 - 49848563
Alignment:
| Q |
83 |
ccaggaagaactgataatgacataaagaactattgga |
119 |
Q |
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| T |
49848599 |
ccaggaagaacagataatgagataaagaactattgga |
49848563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 47846647 - 47846516
Alignment:
| Q |
54 |
gcaggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaagcttttggggaaaca |
153 |
Q |
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| T |
47846647 |
gcagatggtcggtgattgcgggtcaattgcccggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagctttttgggaagca |
47846548 |
T |
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| Q |
154 |
ccgtaaagatcaacaacaacaagcacgtaata |
185 |
Q |
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| T |
47846547 |
tcgtaaagaacaacaattacaagcacgtaata |
47846516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 40254078 - 40253988
Alignment:
| Q |
54 |
gcaggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaagctttt |
144 |
Q |
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| T |
40254078 |
gcaggtggtccattatagcagcgcaattaccaggacgaacggataatgatataaagaactattggaacacaaagttgaagaagaaactttt |
40253988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 53557699 - 53557781
Alignment:
| Q |
56 |
aggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaa |
138 |
Q |
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| T |
53557699 |
aggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaa |
53557781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 21174545 - 21174621
Alignment:
| Q |
56 |
aggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaa |
132 |
Q |
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| T |
21174545 |
aggtggtcaattatagcagctcaattaccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaa |
21174621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 5113858 - 5113943
Alignment:
| Q |
56 |
aggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaagct |
141 |
Q |
| |
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| T |
5113858 |
aggtggtctatcatagcagcacaattaccaggacgaacggataatgatataaagaactactggaacactaggctgaagaagaagct |
5113943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 2461543 - 2461596
Alignment:
| Q |
88 |
aagaactgataatgacataaagaactattggaatacaaggttgaaaaagaagct |
141 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
2461543 |
aagaacagataatgacataaaaaactattggaatactcatttgaaaaagaagct |
2461596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 40819509 - 40819440
Alignment:
| Q |
56 |
aggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaa |
125 |
Q |
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|||||||| || || || |||||||| |||||||||||||||||||| || || ||||| ||||| |||| |
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| T |
40819509 |
aggtggtcaattatagctgctcaattaccaggaagaactgataatgatatcaaaaactactggaacacaa |
40819440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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