View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15112_high_23 (Length: 233)
Name: NF15112_high_23
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 50323903 - 50323684
Alignment:
| Q |
1 |
cacacatgtgattactacaacctgagcctaagaaccatatcttcattgatgaagtagtttctcgttgagtaactgccatcaaaagaagcttttcttcttc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50323903 |
cacacatgtgattactacaacccgagcctaagaaccatatcttcattgatgaagtagtttctcgttgagtaactgccatcaaaagaagcctttcttcttc |
50323804 |
T |
|
| Q |
101 |
attaaattggaaataatctccttttcctctcagttacgacatccattatgagaatgccctaatttatgacaattgaaatattcaatttcaatctactcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50323803 |
attaaattggaaataatctccttttcctctcagttacgacatccattatgagaatgtcctaatttatgacaattgaaatattcaatttcaatctcctcct |
50323704 |
T |
|
| Q |
201 |
tgttaaatgttttccaccct |
220 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
50323703 |
tattaaatgttttccaccct |
50323684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University