View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15112_high_24 (Length: 205)

Name: NF15112_high_24
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15112_high_24
NF15112_high_24
[»] chr8 (3 HSPs)
chr8 (19-189)||(447687-447857)
chr8 (28-189)||(459134-459295)
chr8 (19-189)||(16345710-16345880)
[»] chr5 (7 HSPs)
chr5 (19-189)||(14920818-14920988)
chr5 (28-137)||(11305763-11305872)
chr5 (34-186)||(16861346-16861498)
chr5 (95-158)||(6612295-6612358)
chr5 (95-155)||(42457630-42457690)
chr5 (95-189)||(15773056-15773150)
chr5 (101-157)||(39059053-39059109)
[»] chr2 (4 HSPs)
chr2 (38-189)||(129180-129331)
chr2 (34-170)||(32609825-32609961)
chr2 (19-74)||(20535379-20535434)
chr2 (86-158)||(9583528-9583600)
[»] chr6 (2 HSPs)
chr6 (19-189)||(33548600-33548770)
chr6 (86-158)||(34018114-34018186)
[»] scaffold0027 (1 HSPs)
scaffold0027 (28-160)||(45048-45180)
[»] chr7 (5 HSPs)
chr7 (28-191)||(16559979-16560143)
chr7 (28-191)||(16605519-16605683)
chr7 (34-160)||(14315446-14315572)
chr7 (95-161)||(37237914-37237980)
chr7 (95-189)||(41216321-41216415)
[»] scaffold0094 (2 HSPs)
scaffold0094 (101-189)||(25039-25127)
scaffold0094 (19-72)||(24987-25040)
[»] chr1 (5 HSPs)
chr1 (19-188)||(48610841-48611010)
chr1 (114-189)||(8397850-8397925)
chr1 (34-160)||(9484764-9484890)
chr1 (37-137)||(33136165-33136265)
chr1 (34-74)||(34703536-34703576)
[»] chr4 (4 HSPs)
chr4 (35-158)||(52577905-52578028)
chr4 (19-160)||(2610697-2610838)
chr4 (35-160)||(16584332-16584457)
chr4 (34-158)||(43001630-43001754)
[»] scaffold0003 (1 HSPs)
scaffold0003 (28-170)||(290895-291037)
[»] scaffold0078 (1 HSPs)
scaffold0078 (103-191)||(132-220)
[»] chr3 (6 HSPs)
chr3 (95-194)||(51346341-51346440)
chr3 (27-68)||(14760302-14760343)
chr3 (100-188)||(35503818-35503906)
chr3 (94-149)||(20017536-20017591)
chr3 (19-170)||(34291863-34292014)
chr3 (95-188)||(39770802-39770895)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 447687 - 447857
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgt 118  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  447687 agatttgcgattttcgccttcaaccacacaaaagaaagggacgtaatcttatcaactaactgttgtgtcgaacaaactttgccattgaatatcctgttgt 447786  T
Q  119 ttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  447787 ttctttccttccatatttcccacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 447857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 459134 - 459295
Alignment:
Q  28 atttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttct 127  Q
    |||||||| |||||||||| | ||||||| ||||||||||| ||||| | ||| |  ||||||||  |||| |||||||||| |||| | |||| ||  |    
T  459134 atttttgctttcaaccacaaataagaaagtgacttaatcttgtcaacaatctgataagtcgaacattctttgccattgaataacctgatatttccttctt 459233  T
Q  128 tccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    | |||||||| ||| | ||||||||||||||||   ||||||| || || ||||||||||||    
T  459234 ttcatatttcccacgcagtagcataccaaatcagatgcataatagattgtcgcaccttagaa 459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 16345710 - 16345880
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgt 118  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||| | ||| || | | | ||    || |||||||| ||| ||||||    
T  16345710 agatttgcgattttcgccttcaaccacataaaagaaagagacttaatcttgtcaaccagctgatgagactagcatttgttgccattgaagatcttgttgt 16345809  T
Q  119 ttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    ||||||  ||||| |||| | | || ||||||||||||||||   ||| |||||| || ||| ||||||||    
T  16345810 ttctttctttccaaatttatgaaacagtagcataccaaatcagttgcaaaatggattgtcgcgccttagaa 16345880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 14920818 - 14920988
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgt 118  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||    
T  14920818 agatttgcgattttcgccttcaaccacacaaaagaaagagacttaatcttatcaactaactgatgggtcaaacaaactttgccattgaatatcctgttgt 14920917  T
Q  119 ttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  14920918 ttctttccttccatatttcccacaccgtagcataccaaatcaagagcataatggagtgtcgtaccttagaa 14920988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 11305872 - 11305763
Alignment:
Q  28 atttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttct 127  Q
    ||||| |||||||||||||  |||||||| ||||||||||| ||||||| ||| | |||||| |||  |||| ||||||| |||||||| ||||||| ||    
T  11305872 attttcgccttcaaccacaagaaagaaagtgacttaatcttgtcaactatctgatatgtcgagcaatgtttatcattgaagatcctgttatttctttcct 11305773  T
Q  128 tccatatttc 137  Q
    |||| |||||    
T  11305772 tccaaatttc 11305763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 16861346 - 16861498
Alignment:
Q  34 gccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccata 133  Q
    ||||||||||||| ||  || || |||||||||||||| |||||| |   | |||||||   |||| ||||||| ||| |||| |||||||  |||||||    
T  16861346 gccttcaaccacaaaatggagagtgacttaatcttatccactaaccgcaatatcgaacattgtttatcattgaagatcatgttatttctttctttccata 16861445  T
Q  134 tttctcacaccgtagcataccaaatcaagagcataatggagtgccgcacctta 186  Q
    |||| |||||  ||||| | |||||||   |||||||||| ||||||||||||    
T  16861446 tttcccacacactagcaaatcaaatcagatgcataatggattgccgcacctta 16861498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 6612358 - 6612295
Alignment:
Q  95 ctttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaat 158  Q
    ||||||| ||||| |||||||| |||||||  ||||||||||||||||| |||||| |||||||    
T  6612358 ctttaccgttgaaaatcctgttatttctttctttccatatttctcacacagtagcaaaccaaat 6612295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 42457690 - 42457630
Alignment:
Q  95 ctttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcatacca 155  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||  ||||| |||||| ||||    
T  42457690 ctttaccattgaagatcctattgtttcttttcttccaaattttccacacagtagcaaacca 42457630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 15773150 - 15773056
Alignment:
Q  95 ctttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    |||||||||| || ||| |||| |||||||  ||||| ||||||||||   || || ||||||||||| ||| ||| || |||||||||||||||    
T  15773150 ctttaccattaaagatcatgttatttctttctttccaaatttctcacatactaacaaaccaaatcaagtgcacaatagattgccgcaccttagaa 15773056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 39059109 - 39059053
Alignment:
Q  101 cattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaa 157  Q
    ||||||| ||| ||||||||||||  ||||| |||||||| ||||||||| ||||||    
T  39059109 cattgaaaatcttgttgtttctttctttccaaatttctcataccgtagcaaaccaaa 39059053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 129180 - 129331
Alignment:
Q  38 tcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccatatttc 137  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||  |||||||||||    
T  129180 tcaaccacacaaaagaaattgacttaatcttatcaactaactgatgtgtcgaacaaactttgccattgaatatcatgttgtctctttctttccatatttc 129279  T
Q  138 tcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
     |||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  129280 ccacaccgtagcataccaaatcaagtgcataatggaatgcctcaccttagaa 129331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 32609961 - 32609825
Alignment:
Q  34 gccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccata 133  Q
    ||||||||||||||| ||| ||| ||||||||||| || || | ||| | ||| |||||  ||||||| || || ||| |||||||||||| |||||| |    
T  32609961 gccttcaaccacacataagtaagagacttaatcttgtcgacaatctgatatgttgaacattctttaccgttaaaaatcatgttgtttctttccttccaaa 32609862  T
Q  134 tttctcacaccgtagcataccaaatcaagagcataat 170  Q
    ||||||||||||| ||||||||||||||  |||||||    
T  32609861 tttctcacaccgtcgcataccaaatcaactgcataat 32609825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 20535379 - 20535434
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatcaac 74  Q
    |||||||| ||||| ||||||||||||| | ||| ||| |||||||||||||||||    
T  20535379 agatttgcaattttcgccttcaaccacaaataagtaagtgacttaatcttatcaac 20535434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 9583528 - 9583600
Alignment:
Q  86 tcgaacaaactttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaat 158  Q
    |||| ||| ||||||||||||| |||||||| |||||||  ||  ||||||| ||||| |||||| |||||||    
T  9583528 tcgagcaatctttaccattgaaaatcctgttatttctttctttttatatttcccacacagtagcaaaccaaat 9583600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 33548600 - 33548770
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgt 118  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||| |||| ||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  33548600 agatttgcaattttcgccttcaaccacacaaaagaaagtgacttaatgttattaactatctgatgtgtcgaacaaactttgccattgaatatcctgttgt 33548699  T
Q  119 ttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    ||||||  || |||||||  |||| |||||||||||| || ||| |||||||||| |||||||||||||||    
T  33548700 ttctttcttttcatattttccacatcgtagcataccatattaagtgcataatggaatgccgcaccttagaa 33548770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 34018114 - 34018186
Alignment:
Q  86 tcgaacaaactttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaat 158  Q
    |||| ||| |||||||||| || |||||||| ||||||| |||||||||||| ||||| |||||  |||||||    
T  34018114 tcgagcaatctttaccattaaaaatcctgttatttctttccttccatatttcccacacagtagcgaaccaaat 34018186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 45180 - 45048
Alignment:
Q  28 atttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttct 127  Q
    ||||| ||||||||||||| | | ||||| ||||||||||||||||| | ||| |  ||||| ||  |||| |||||||||| |||| | |||||||  |    
T  45180 attttcgccttcaaccacaaatatgaaagtgacttaatcttatcaacaatctgatacgtcgagcattctttgccattgaataacctgctatttctttctt 45081  T
Q  128 tccatatttctcacaccgtagcataccaaatca 160  Q
    ||| ||||||||||||||| |||||||||||||    
T  45080 tccttatttctcacaccgttgcataccaaatca 45048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 16560143 - 16559979
Alignment:
Q  28 atttttgccttcaaccacacaaaa-gaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttc 126  Q
    ||||| |||||||| |||| |||| || || |||||||||||||  || | ||| | ||| |||||  |||| |||||||||| |||||| |||||||      
T  16560143 attttcgccttcaatcacaaaaaaagatagtgacttaatcttattgacaatctgatatgttgaacattcttttccattgaataacctgttatttctttct 16560044  T
Q  127 ttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaata 191  Q
    ||||||||||| |||||||||||| ||||||| |   ||||||| || |||||||||||||||||    
T  16560043 ttccatatttcccacaccgtagcaaaccaaatgagatgcataatagattgccgcaccttagaata 16559979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 16605519 - 16605683
Alignment:
Q  28 atttttgccttcaaccacacaaaa-gaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttc 126  Q
    ||||| |||||||| |||| |||| || || |||||||||||||  || | ||| | ||| |||||  |||| |||||||||| |||||| |||||||      
T  16605519 attttcgccttcaatcacaaaaaaagatagtgacttaatcttattgacaatctgatatgttgaacattcttttccattgaataacctgttatttctttct 16605618  T
Q  127 ttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaata 191  Q
    ||||||||||| |||||||||||| ||||||| |   ||||||| || |||||||||||||||||    
T  16605619 ttccatatttcccacaccgtagcaaaccaaatgagatgcataatagattgccgcaccttagaata 16605683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 14315446 - 14315572
Alignment:
Q  34 gccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccata 133  Q
    ||||||||||||   ||||| || ||||||||||| ||| ||| ||| | |||||| |||  |||| |||||||||||||||| ||||||| |||||| |    
T  14315446 gccttcaaccacgagaaagagagtgacttaatcttgtcagctatctgatatgtcgagcaatgtttatcattgaatatcctgttatttctttccttccaaa 14315545  T
Q  134 tttctcacaccgtagcataccaaatca 160  Q
    |||| ||| | |||||| |||||||||    
T  14315546 tttcccacgcagtagcaaaccaaatca 14315572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 37237914 - 37237980
Alignment:
Q  95 ctttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaatcaa 161  Q
    ||||||||||||| || ||||| |||||||  || |||||||| ||||| |||||| ||||||||||    
T  37237914 ctttaccattgaagatactgttatttctttctttacatatttcccacacagtagcaaaccaaatcaa 37237980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 41216321 - 41216415
Alignment:
Q  95 ctttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    |||||||||||||||   |||| |||||||  ||||||||||| ||| | ||||||||||||||||    || ||| || |||||||||||||||    
T  41216321 ctttaccattgaataaaatgttatttctttctttccatatttcacacgcagtagcataccaaatcagatacaaaatagaatgccgcaccttagaa 41216415  T

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Target: scaffold0094 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 25039 - 25127
Alignment:
Q  101 cattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    ||||||| ||| ||||||||||||  ||||| | |   ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  25039 cattgaaaatcttgttgtttctttctttccaaactgtccacaccgtagcataccaaatccagtgcataatggagtgccgcaccttagaa 25127  T

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Target: scaffold0094; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 24987 - 25040
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatca 72  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  24987 agatttgcgattttcaccttcaaccacacaaaagaaacggacttaatcttatca 25040  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 48610841 - 48611010
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgt 118  Q
    |||||| | |||||| |||| ||||| | | ||| ||| ||||||||||||||||| | ||| | |||||||||  ||||  ||||||| || ||| | |    
T  48610841 agatttactatttttacctttaaccaaaaataagtaagtgacttaatcttatcaacaatctgatatgtcgaacattctttgtcattgaaaattctgctat 48610940  T
Q  119 ttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttaga 188  Q
    ||||||  ||||||||||| | ||| |||||||||||||||||  ||| ||| || || |||||||||||    
T  48610941 ttctttctttccatatttcccccacagtagcataccaaatcaaatgcaaaatagattgtcgcaccttaga 48611010  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 8397850 - 8397925
Alignment:
Q  114 gttgtttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaa 189  Q
    |||||||||||  ||||||||||| ||||| |||||| ||||||||||  |||  || || |||||||||||||||    
T  8397850 gttgtttctttatttccatatttcccacacagtagcaaaccaaatcaaatgcaagatagattgccgcaccttagaa 8397925  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 9484890 - 9484764
Alignment:
Q  34 gccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccata 133  Q
    |||||||||||||  || ||||  |||||||||||||| ||||  ||   | |||||||  ||||||||||||||||| |||| |||||||  || || |    
T  9484890 gccttcaaccacaagaaggaaattgacttaatcttatctactatttgcaatatcgaacattctttaccattgaatatcttgttatttctttcttttcaaa 9484791  T
Q  134 tttctcacaccgtagcataccaaatca 160  Q
    |||| |||||  ||||| |||||||||    
T  9484790 tttcccacacactagcaaaccaaatca 9484764  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 33136165 - 33136265
Alignment:
Q  37 ttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccatattt 136  Q
    |||||||||| ||| ||||| ||||||| ||| || || | ||| || || ||||| |||||| ||||||||| |||| ||||| |||  ||||||||||    
T  33136165 ttcaaccacataaaggaaagagacttaaccttgtcgacaatctgatgagttgaacatactttatcattgaataacctgctgtttatttctttccatattt 33136264  T
Q  137 c 137  Q
    |    
T  33136265 c 33136265  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 34703536 - 34703576
Alignment:
Q  34 gccttcaaccacacaaaagaaagggacttaatcttatcaac 74  Q
    ||||||||||||| |||||  ||||||||||||||||||||    
T  34703536 gccttcaaccacataaaagtgagggacttaatcttatcaac 34703576  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 52578028 - 52577905
Alignment:
Q  35 ccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccatat 134  Q
    |||||||||||  ||||| |||||||||||||||||| |  | |||  |   ||| ||||||||| ||||||| | |||||| ||||||| |||||| ||    
T  52578028 ccttcaaccacgtaaaagcaagggacttaatcttatctatcacctgaagaaccgagcaaactttatcattgaaaagcctgttatttctttccttccagat 52577929  T
Q  135 ttctcacaccgtagcataccaaat 158  Q
    ||| |||||||||||| |||||||    
T  52577928 ttcccacaccgtagcaaaccaaat 52577905  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 2610697 - 2610838
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgt 118  Q
    |||||||  ||||| |||||||| |||||| ||| ||| ||||||||||| ||||  | ||| | ||| |||||  |||| |  || || ||||||||||    
T  2610697 agatttggaattttcgccttcaatcacacataagtaagagacttaatcttgtcaataatctgatatgttgaacattctttgctgttaaaaatcctgttgt 2610796  T
Q  119 ttcttttcttccatatttctcacaccgtagcataccaaatca 160  Q
    |||||| |||||| ||||  |||||||| |||||||||||||    
T  2610797 ttctttccttccaaattttccacaccgtcgcataccaaatca 2610838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 16584457 - 16584332
Alignment:
Q  35 ccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccatat 134  Q
    |||||||||||| | ||||||| ||||||||||| ||| | |  || | ||| |||||  ||||| ||||||||| | |||| |||||||  || |||||    
T  16584457 ccttcaaccacaaataagaaagagacttaatcttttcatcaatttgatatgttgaacattctttatcattgaataacttgttatttctttcttttcatat 16584358  T
Q  135 ttctcacaccgtagcataccaaatca 160  Q
    || |||| | ||||||||||||||||    
T  16584357 ttttcacgcagtagcataccaaatca 16584332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 43001754 - 43001630
Alignment:
Q  34 gccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttcttccata 133  Q
    ||||||||||||| ||| |  || |||||||||||||| || |  ||   |||||| ||  ||||| |||||||||  || ||||||||||| ||||| |    
T  43001754 gccttcaaccacataaatgttagtgacttaatcttatccacgatttgagatgtcgagcattctttatcattgaataatctattgtttctttttttccaaa 43001655  T
Q  134 tttctcacaccgtagcataccaaat 158  Q
    |||| ||||| ||||||||||||||    
T  43001654 tttcccacactgtagcataccaaat 43001630  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 291037 - 290895
Alignment:
Q  28 atttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgtttcttttct 127  Q
    ||||| ||||||||||||| | ||| ||| ||||||||||  ||||| | ||| | ||| |||||   ||| || || || |||||||||||||||| ||    
T  291037 attttcgccttcaaccacatataagtaagagacttaatctagtcaacaatctgatatgttgaacattttttgcctttaaaaatcctgttgtttctttcct 290938  T
Q  128 tccatatttctcacaccgtagcataccaaatcaagagcataat 170  Q
    |||| |||||||||||||| |||  |||||||||  |||||||    
T  290937 tccaaatttctcacaccgtcgcaagccaaatcaactgcataat 290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 220 - 132
Alignment:
Q  103 ttgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttagaata 191  Q
    ||||||| ||| || |||||||  |||||||||||||||||||||||| ||||||| |   ||||||| || || ||||||||||||||    
T  220 ttgaataacctattatttctttctttccatatttctcacaccgtagcaaaccaaatgagatgcataatagattgtcgcaccttagaata 132  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 51346341 - 51346440
Alignment:
Q  95 ctttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaatcaaga-gcataatggagtgccgcaccttagaataat 193  Q
    ||||||||||||||| ||||||  ||||||  ||||||||||||||| | |||||||||||||| |||| ||| ||| || || |||||||||||| |||    
T  51346341 ctttaccattgaataacctgttaattctttctttccatatttctcacgcagtagcataccaaat-aagatgcaaaatagattgtcgcaccttagaacaat 51346439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 14760302 - 14760343
Alignment:
Q  27 gatttttgccttcaaccacacaaaagaaagggacttaatctt 68  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  14760302 gattttcgccttcaaccacacaaaagaaagagacttaatctt 14760343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 35503906 - 35503818
Alignment:
Q  100 ccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttaga 188  Q
    |||||||| |||||||| |||||||  ||||||||||| || || |||||| ||||||| ||  ||||||| |  ||||||||||||||    
T  35503906 ccattgaaaatcctgttatttctttctttccatatttcccaaacagtagcaaaccaaattaaatgcataatcgcttgccgcaccttaga 35503818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 20017536 - 20017591
Alignment:
Q  94 actttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagc 149  Q
    |||||| ||||||| | |||||| ||||||| |||||||||||| |||||||||||    
T  20017536 actttatcattgaagagcctgttatttctttccttccatatttcccacaccgtagc 20017591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 34292014 - 34291863
Alignment:
Q  19 agatttgcgatttttgccttcaaccacacaaaagaaagggacttaatcttatcaactaactgttgtgtcgaacaaactttaccattgaatatcctgttgt 118  Q
    |||||||  ||||| |||||||||||| |||||  ||| |||||||| || || || | ||| | ||| |||||  |||| || || || ||| |||| |    
T  34292014 agatttggaattttcgccttcaaccacgcaaaattaagagacttaattttgtcgacaatctgatatgttgaacattcttttcctttaaaaatcatgttat 34291915  T
Q  119 ttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataat 170  Q
    |||||| |||||| ||||| ||||||||  |||||||||||||  |||||||    
T  34291914 ttctttccttccaaatttcccacaccgtcacataccaaatcaactgcataat 34291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 39770895 - 39770802
Alignment:
Q  95 ctttaccattgaatatcctgttgtttcttttcttccatatttctcacaccgtagcataccaaatcaagagcataatggagtgccgcaccttaga 188  Q
    ||||||||||||| |||||||| ||| |||  ||||| ||||| |||||  ||||| |||||||||| |||   || || ||||||||||||||    
T  39770895 ctttaccattgaagatcctgttatttatttctttccaaatttcccacacaatagcaaaccaaatcaaaagcgagatagattgccgcaccttaga 39770802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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