View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_high_5 (Length: 444)
Name: NF15112_high_5
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 48729286 - 48728877
Alignment:
| Q |
17 |
atgaaggacatgttgatcaaagcaggagctttgcatggtttttcacttgctcctactccgcttcacgaagagctacgatcaaaaatcacatttaacgaga |
116 |
Q |
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| T |
48729286 |
atgaaggacatgttgatcaaagcaggagctttgcatggtttttcacttgctcctactccgcttcacgaagagctacaatcaaaaatcacatttaacgaga |
48729187 |
T |
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| Q |
117 |
gaatagcaatttgtgttactcgtttaagaaggagaatttcaagtgacacaagaaacgctttgttagtagttgctattcttttcgcaacaagtgcatatga |
216 |
Q |
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| T |
48729186 |
gaatagcaatttgtgttactcgtttaagaaggagaatttcaagtgacacaagaaacgctttgttagtagttgctattcttttcgcaacaagtgcatatga |
48729087 |
T |
|
| Q |
217 |
agcaacacttaaccctccagctggtggagggaaattagtgatgatgaaaatgcatacatacttcttagggttttggtcgcttaatacattttcattttat |
316 |
Q |
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| T |
48729086 |
agcaacacttaaccctccagctggtggggggaaattagtgatgatgaaaatgcatacatacttcttagggttttggtcgcttaatacattttcattttat |
48728987 |
T |
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| Q |
317 |
gtttcaattttgatgatgtgtttattaatgccaagaggacgtataagtgttatagtgacatgtccacttgctctattctgtggctgttatatgttttcca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48728986 |
gtttcaattttgatgatgtgtttattaatgccaagaggacgtataagtgttatagtgacatgtccacttgctctattctgtggctgttatatgttttcca |
48728887 |
T |
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| Q |
417 |
tgctagttat |
426 |
Q |
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| T |
48728886 |
tgctggttat |
48728877 |
T |
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