View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_1 (Length: 706)
Name: NF15112_low_1
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 26 - 694
Target Start/End: Complemental strand, 36333866 - 36333197
Alignment:
| Q |
26 |
ataaaaatgaacatttgtacttaaatataaacaaacacctttgcatcaagtggcttatctgatgttgaaccagctccttttttctacaacaaaagaaatt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333866 |
ataaaaatgaacatttgtacttaaatataaacaaacacctttgcatcaagtggcttatctgatgttgaaccagctccttttttctacaacaaaagaaatt |
36333767 |
T |
|
| Q |
126 |
atccatatataagttttatttaattaaaagcaaaacagaaagatatacacaaatatttcaaagtgtagaacaaaaatg----gttaagcaaatgagtgag |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
36333766 |
atccatatataagttttatttaattaaaagcaaaacagaaagacatacacaaatatttcaa-gtgtagaacaaaaatgcatggttaagcaaatgagtgag |
36333668 |
T |
|
| Q |
222 |
ggaaaaatagaaaatttgttaagcatataaaaatgctacacttttaattcaatgaagaacaaaaagatggcatgataatattaaagcgtgctcactgaat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36333667 |
ggaaaaatagaaaatttgttaagcatataaaaatgctacacttttaattcaatgaagaacaaaaagatggcatgataatattaaagtgtgctcactgaat |
36333568 |
T |
|
| Q |
322 |
tttgagaatgttgaagtccatttgaccatttttcagtaggaatgcaatcatcttcaatgtgatatggatagcaaaatggatcattttcagccattttttg |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333567 |
tttgagaatgttgaagtccatttgaccatttttcagtaggaatgcaatcatcttcaatgtgatatggatagcaaaatggatcattttcagccattttttg |
36333468 |
T |
|
| Q |
422 |
tgaactgtttctttagacttgtgttagagaaacacaagttttcactatatcaagtgaagagtgtgtgagaatgagtcactttttaatgtgnnnnnnnnct |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
36333467 |
tgaactgtttctttagacttgtgttagagaaacacaagttttcactatatcaagtgaagagtgtgtgagaatgagtcactttttaatgcgaaaaaaaact |
36333368 |
T |
|
| Q |
522 |
ttgataagtactcaaaagattctcactttgnnnnnnngttagtacaacataatactactagtatcctnnnnnnnnnnnnnnnnnnnatcatgttttcatg |
621 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36333367 |
ttgataagtactcaaaagattctcactttgtttttttgttagtacaacataatactactagtatcct--tctctctctctctctctatcatgttttcatg |
36333270 |
T |
|
| Q |
622 |
tcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtgctg |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333269 |
tcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtgctg |
36333197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 551
Target Start/End: Original strand, 2629670 - 2629701
Alignment:
| Q |
520 |
ctttgataagtactcaaaagattctcactttg |
551 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
2629670 |
ctttgataagtactcaaaagattctcactttg |
2629701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 551
Target Start/End: Original strand, 22979591 - 22979622
Alignment:
| Q |
520 |
ctttgataagtactcaaaagattctcactttg |
551 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
22979591 |
ctttgataagtactcaaaagattctcactttg |
22979622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 551
Target Start/End: Complemental strand, 23808813 - 23808782
Alignment:
| Q |
520 |
ctttgataagtactcaaaagattctcactttg |
551 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
23808813 |
ctttgataagtactcaaaagattctcactttg |
23808782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 19277759 - 19277702
Alignment:
| Q |
62 |
acctttgcatcaagtggcttatctgatgttgaaccagctccttttttctacaacaaaa |
119 |
Q |
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||||||| |||||||| ||| |||||||| ||| ||||||||||||||| ||| |||| |
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| T |
19277759 |
acctttggatcaagtgtcttttctgatgtggaaacagctccttttttctgcaataaaa |
19277702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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