View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_11 (Length: 332)
Name: NF15112_low_11
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 35182160 - 35181829
Alignment:
| Q |
1 |
cggtaacaagataccttttaaaaaattaaaacttcttttcccatttcatagttgaaatttattcaaccattttgactcccannnnnnntccaccttacct |
100 |
Q |
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| T |
35182160 |
cggtaacaagataccttttaaaaaattaaaacttcttttcccatttcatagttgaaatttattcaaccattttgattcccaccccccctccaccttacct |
35182061 |
T |
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| Q |
101 |
cttgtaacatgtttaatcttaatgttttcagggaacaaacaatattaatgccataattctagatcaaaaagagcatatctctgaatatcctcagttgagg |
200 |
Q |
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| T |
35182060 |
cttgtaacatgtttaatcttaatgttttcagggaacaaacaatattaatgccataattctagatcaaaaagagcatatctctgaatatcctcagttgagg |
35181961 |
T |
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| Q |
201 |
gctgaagcattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35181960 |
gctgaagcattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcagt |
35181861 |
T |
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| Q |
301 |
atcttctgtggtatggttacccctatgcttct |
332 |
Q |
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| T |
35181860 |
atcttctgtggtatggttacccttttgcttct |
35181829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 102 - 332
Target Start/End: Complemental strand, 35176116 - 35175889
Alignment:
| Q |
102 |
ttgtaacatgtttaatcttaatgttttcagggaacaaacaatattaatgccataattctagatcaaaaagagcatatctctgaatatcctcagttgaggg |
201 |
Q |
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|||||| ||||||| ||||||| |||||||||||||||||| |||| ||||| |||||| || ||||||||||||||||||||||||||| | |||||| |
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| T |
35176116 |
ttgtaatatgtttattcttaatactttcagggaacaaacaatgttaaagccattattctaaataaaaaagagcatatctctgaatatcctccgctgaggg |
35176017 |
T |
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| Q |
202 |
ctgaagcattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcagta |
301 |
Q |
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| T |
35176016 |
ccgaaggattgtcaataatgaggggacttaaaattcttatattata---tcatcaaaaaatttcaggaagtctcaatttcatttctaacagcttgcagta |
35175920 |
T |
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| Q |
302 |
tcttctgtggtatggttacccctatgcttct |
332 |
Q |
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| T |
35175919 |
tcttctttggtatggttacccttttgcttct |
35175889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 125 - 332
Target Start/End: Complemental strand, 35052752 - 35052548
Alignment:
| Q |
125 |
ttttcagggaacaaacaatattaatgccataattctagatcaaaaagagcatatctctgaatatcctcagttgagggctgaagcattgtcaataatgagg |
224 |
Q |
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||||||||||||| |||| |||| ||||||||| ||||| |||||||| ||||||| |||||||||| ||| | |||||||| |||||||||||||||| |
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| T |
35052752 |
ttttcagggaacagacaaggttaaagccataattttagataaaaaagaggatatctcggaatatcctctgttaaaggctgaaggattgtcaataatgagg |
35052653 |
T |
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| Q |
225 |
ggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcagtatcttctgtggtatggttacccct |
324 |
Q |
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| T |
35052652 |
ggacttaaaattcttata---ttatatcatacaaatttttcaggaagtctcaacttcctttctaacagcttgcagtatcttctgtggtatggttaccctt |
35052556 |
T |
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| Q |
325 |
atgcttct |
332 |
Q |
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||||||| |
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| T |
35052555 |
ttgcttct |
35052548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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