View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15112_low_13 (Length: 320)

Name: NF15112_low_13
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15112_low_13
NF15112_low_13
[»] chr8 (1 HSPs)
chr8 (11-304)||(40406651-40406943)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 40406651 - 40406943
Alignment:
Q  11 caaagggacagataagccctccctaaaagtgcttcaatttaaaaacaattaatgttcatcttgataacggcatcgttctaattagaagnnnnnnntagcg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  40406651 caaagggacagataagccctccctaaaagtgcttcaatttaaaaacaattaatgttcatcttgataacggcatcgttctaattagaagaaaaaaatagcg 40406750  T
Q  111 aacactatatgaataaaggatactaatctaatctagtcaaatcccattaaatcacaaaagggaaagtgtttaaaagcaatgccattatgctaataattag 210  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  40406751 aacactatattattaaaggatactaatctaatctagtcaaatcccattccatcacaaaaggaaaagtgtt-aaaagcaatgccattatgctaataattag 40406849  T
Q  211 aaattaattaaatattgaacatctggattagaacgcaatacaatgaagattgactcttaattaaaatttacttacgaacgtttgctcaaaatat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40406850 aaattaattaaatattgaacatctggattagaacgcaatacaatgaagattgactcttaattaaaatttacttacgaacgtttgctcaaaatat 40406943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University