View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15112_low_14 (Length: 315)

Name: NF15112_low_14
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15112_low_14
NF15112_low_14
[»] chr4 (1 HSPs)
chr4 (1-294)||(44144728-44145025)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 44144728 - 44145025
Alignment:
Q  1 attgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaatnnnnnnnnnn----tcgtaaata 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||    
T  44144728 attgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaataaaaaaaaaaaaaatcgtaaata 44144827  T
Q  97 aacaaatataatatcaggtgttttattgtcaaaaattgcaatcaaatttagactcacttgcaagtttcgaataggaggattattttaatctttttaacat 196  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  44144828 aacaaatataatatcaggtgttttattgtcaaaaaatgcaatcaaatttagactcacttgcaagtttcgaataggaggattattttaatttttttgacat 44144927  T
Q  197 gtaaacaagattttcattagagacataataagtcataacaaatacaattcatggcagggtctggaccattttaaaaccaaagtcctagaattcatgtg 294  Q
    | ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44144928 gaaaataagattttcattagagaaataataagtcataacaaatgcaattcatggcaaggtctggaccattttacaaccaaagtcctagaattcatgtg 44145025  T

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