View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_17 (Length: 266)
Name: NF15112_low_17
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 2186173 - 2186425
Alignment:
| Q |
1 |
aatattagatgcagcagtgttagacaaatggttagagaagtggggaccagaaaaggttgaatcagctttggaagagtatcagttcattaggctgccagtt |
100 |
Q |
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| T |
2186173 |
aatattagatgcagcagtgttaggcaaatgcttagagaagtggggaccagaaaaggttgaatcagctttggaagagtatcagttcattaggctgccagtt |
2186272 |
T |
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| Q |
101 |
acttccagccaagttctttatgcaaggcgtcttggtcgcttaaaacaaggactggtccttcctgatagacatcctttggaccccaagttagcaaatccag |
200 |
Q |
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| T |
2186273 |
acttccaaccaagttctttatgcaaggtgtcttggtcgcttaaaacaaggactggtccttcctgatagacatcctttggaccccaagttagcaaatccag |
2186372 |
T |
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| Q |
201 |
aggattgccaggatcttctcctgaggaacactccttttttctatgacgttcct |
253 |
Q |
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| T |
2186373 |
aggattaccaggatcttctcctgaggaacactccttttttctatgacgttcct |
2186425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 2179842 - 2179649
Alignment:
| Q |
1 |
aatattagatgcagcagtgttagacaaatggttagagaagtggggaccagaaaaggttgaatcagctttggaagagtatcagttcattaggctgccagtt |
100 |
Q |
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||||||||||||||| ||||||| |||||| ||||||| |||||| |||||| | ||||||| |||||||||||||||||| ||| ||| || |||||| |
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| T |
2179842 |
aatattagatgcagcggtgttaggcaaatgcatagagaaatggggaacagaaatgcttgaatcggctttggaagagtatcagctcactagactaccagtt |
2179743 |
T |
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| Q |
101 |
acttccagccaagttctttatgcaaggcgtcttggtcgcttaaaacaaggactggtccttcctgatagacatcctttggaccccaagttagcaa |
194 |
Q |
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| T |
2179742 |
acttccaagcaagttcttcatgcaaggcgtcttggtcgcataaaacaaggtctggtgctccccgatagagatccttttgatcccaagtcagcaa |
2179649 |
T |
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