View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15112_low_18 (Length: 256)

Name: NF15112_low_18
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15112_low_18
NF15112_low_18
[»] chr6 (19 HSPs)
chr6 (101-256)||(14623210-14623365)
chr6 (103-256)||(14589552-14589705)
chr6 (15-75)||(14623397-14623457)
chr6 (132-255)||(26388201-26388324)
chr6 (133-256)||(33123020-33123143)
chr6 (132-236)||(29938623-29938726)
chr6 (136-254)||(7632781-7632899)
chr6 (133-251)||(3989524-3989642)
chr6 (139-254)||(3989524-3989639)
chr6 (136-254)||(14623212-14623330)
chr6 (136-254)||(33123022-33123140)
chr6 (131-256)||(7632776-7632901)
chr6 (145-254)||(29938627-29938735)
chr6 (120-180)||(10405046-10405106)
chr6 (15-75)||(14589739-14589798)
chr6 (136-254)||(26388202-26388320)
chr6 (136-254)||(14589554-14589672)
chr6 (131-180)||(23767941-23767990)
chr6 (132-176)||(30629598-30629642)
[»] chr4 (33 HSPs)
chr4 (132-254)||(22720517-22720639)
chr4 (132-254)||(52673609-52673731)
chr4 (132-254)||(22720513-22720635)
chr4 (132-254)||(22768155-22768277)
chr4 (119-254)||(52673592-52673727)
chr4 (134-244)||(41622106-41622216)
chr4 (132-251)||(22768151-22768270)
chr4 (132-254)||(49083049-49083166)
chr4 (132-180)||(2198055-2198103)
chr4 (202-254)||(2198059-2198111)
chr4 (132-254)||(44626173-44626293)
chr4 (131-244)||(6464885-6464998)
chr4 (132-254)||(49083053-49083170)
chr4 (132-180)||(22923666-22923714)
chr4 (132-180)||(22928319-22928367)
chr4 (132-180)||(22984598-22984646)
chr4 (132-180)||(22998186-22998234)
chr4 (138-234)||(41622128-41622224)
chr4 (131-180)||(15794769-15794819)
chr4 (131-180)||(2198121-2198169)
chr4 (206-254)||(22923670-22923718)
chr4 (206-254)||(22928323-22928371)
chr4 (206-254)||(22984602-22984650)
chr4 (206-254)||(22998190-22998238)
chr4 (207-248)||(2198118-2198159)
chr4 (132-169)||(5281231-5281268)
chr4 (131-180)||(39396827-39396876)
chr4 (126-175)||(39897110-39897159)
chr4 (132-173)||(44156092-44156133)
chr4 (120-169)||(50485791-50485840)
chr4 (131-179)||(6131436-6131484)
chr4 (187-254)||(15794774-15794842)
chr4 (119-175)||(22020110-22020166)
[»] chr5 (17 HSPs)
chr5 (133-254)||(26221035-26221156)
chr5 (132-255)||(21032539-21032662)
chr5 (132-252)||(42364233-42364353)
chr5 (131-254)||(29486504-29486627)
chr5 (132-234)||(5240233-5240335)
chr5 (131-254)||(29486509-29486632)
chr5 (154-254)||(21032543-21032643)
chr5 (131-256)||(7604194-7604320)
chr5 (132-254)||(42364227-42364349)
chr5 (136-251)||(26221035-26221150)
chr5 (134-180)||(892560-892606)
chr5 (156-254)||(5240237-5240335)
chr5 (206-254)||(892562-892610)
chr5 (136-180)||(6834041-6834085)
chr5 (131-169)||(35969225-35969263)
chr5 (131-175)||(1098634-1098678)
chr5 (131-175)||(36864512-36864556)
[»] chr8 (12 HSPs)
chr8 (132-256)||(6197835-6197959)
chr8 (136-254)||(6197837-6197955)
chr8 (146-256)||(13325116-13325222)
chr8 (132-224)||(27939032-27939124)
chr8 (131-254)||(11322569-11322690)
chr8 (136-244)||(13325116-13325220)
chr8 (131-238)||(11322589-11322695)
chr8 (206-248)||(158444-158486)
chr8 (146-180)||(158448-158482)
chr8 (134-180)||(1214021-1214067)
chr8 (206-254)||(28205809-28205857)
chr8 (132-180)||(43140553-43140601)
[»] chr7 (24 HSPs)
chr7 (136-254)||(4132397-4132516)
chr7 (117-254)||(38646177-38646315)
chr7 (136-256)||(4132397-4132518)
chr7 (132-180)||(26982771-26982819)
chr7 (117-253)||(41115562-41115698)
chr7 (119-180)||(45578005-45578066)
chr7 (206-254)||(26982775-26982823)
chr7 (132-180)||(43250424-43250472)
chr7 (203-254)||(43250417-43250468)
chr7 (134-180)||(38646175-38646221)
chr7 (132-174)||(43250376-43250418)
chr7 (132-180)||(21857076-21857124)
chr7 (216-254)||(43250380-43250418)
chr7 (204-254)||(45578022-45578072)
chr7 (131-180)||(24155642-24155691)
chr7 (213-254)||(38646255-38646296)
chr7 (137-254)||(41115562-41115679)
chr7 (132-180)||(21587842-21587890)
chr7 (206-254)||(21587846-21587894)
chr7 (206-254)||(21857080-21857128)
chr7 (132-180)||(21857171-21857219)
chr7 (131-175)||(30457820-30457864)
chr7 (191-251)||(34703509-34703569)
chr7 (191-251)||(40416972-40417032)
[»] chr1 (13 HSPs)
chr1 (136-254)||(8352146-8352264)
chr1 (119-256)||(8352129-8352266)
chr1 (140-254)||(26468305-26468419)
chr1 (139-253)||(31635757-31635871)
chr1 (167-254)||(14773765-14773852)
chr1 (132-251)||(31635752-31635871)
chr1 (136-254)||(43731130-43731248)
chr1 (132-250)||(26468301-26468419)
chr1 (134-256)||(43731128-43731250)
chr1 (132-200)||(30800186-30800254)
chr1 (156-234)||(897042-897120)
chr1 (131-180)||(39940571-39940620)
chr1 (131-175)||(10256787-10256831)
[»] chr3 (12 HSPs)
chr3 (132-254)||(50334932-50335053)
chr3 (154-254)||(35239682-35239782)
chr3 (134-236)||(29497369-29497471)
chr3 (136-254)||(50334932-50335049)
chr3 (152-250)||(32711221-32711319)
chr3 (154-254)||(29497371-29497471)
chr3 (132-236)||(35239682-35239786)
chr3 (135-169)||(42912351-42912385)
chr3 (221-254)||(42912352-42912385)
chr3 (131-180)||(53711867-53711916)
chr3 (127-256)||(53711870-53711998)
chr3 (154-234)||(48593175-48593255)
[»] chr2 (13 HSPs)
chr2 (164-254)||(8996792-8996882)
chr2 (131-234)||(8717540-8717643)
chr2 (132-180)||(10495729-10495777)
chr2 (132-180)||(43100756-43100804)
chr2 (131-193)||(8996729-8996791)
chr2 (132-226)||(8996792-8996886)
chr2 (132-254)||(20218557-20218679)
chr2 (132-256)||(13953774-13953899)
chr2 (132-256)||(14094981-14095106)
chr2 (206-254)||(10495725-10495773)
chr2 (149-224)||(39792136-39792211)
chr2 (213-254)||(43100760-43100801)
chr2 (206-254)||(8996734-8996782)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 14623365 - 14623210
Alignment:
Q  101 ctgttgaaagggaaacatatactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaag 200  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  14623365 ctgttgaaagggaaacatatactccctctcatcactattataaataaaacttcactttttagatacattgaaaaattaatctgttcagtctataataaag 14623266  T
Q  201 gctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataat 256  Q
      || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14623265 attagatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataat 14623210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 14589705 - 14589552
Alignment:
Q  103 gttgaaagggaaacatatactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggc 202  Q
    |||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |    
T  14589705 gttgaaagggaaacctatactccctctcatcactattataaataaaactttactttttagatacattgaataatcaatctgtccggtctataataaagac 14589606  T
Q  203 tatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataat 256  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14589605 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataat 14589552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 14623457 - 14623397
Alignment:
Q  15 caaaggcaaactttagtcaatgaactactggcatcaacatcacatggattattattgcaat 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14623457 caaaggcaaactttagtcaatgaactactggcatcaacatcacatggattattattgcaat 14623397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 26388324 - 26388201
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||||| ||||||||| ||| |||||||||||||| | | |||||||||||||||  || |||||| ||||||||||| ||||| |    
T  26388324 tcactattataagaaaaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacattaattattcaatatatctaa 26388225  T
Q  232 aaagtgaagttttgcttataataa 255  Q
    |||||  ||||||| |||||||||    
T  26388224 aaagtagagttttgtttataataa 26388201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 256
Target Start/End: Complemental strand, 33123143 - 33123020
Alignment:
Q  133 cactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaa 232  Q
    |||||||||||| |||| || |||||||||||||| | |||||||||  | || ||||||||| |||| ||| |||||| ||||||||||||||| | ||    
T  33123143 cactattataagcaaaagtttactttttagatacacttaataattaacgtatcaagtctataaaaaagactagatacattaattattcaatgtatttaaa 33123044  T
Q  233 aagtgaagttttgcttataataat 256  Q
    ||||||||||||| ||||||||||    
T  33123043 aagtgaagttttgtttataataat 33123020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 29938623 - 29938726
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||| | || ||| || ||||||| ||| |||||| ||||||||||||||||| |    
T  29938623 tcactattataagtaaaatttcactttttagatacatt-aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatctaa 29938721  T
Q  232 aaagt 236  Q
    |||||    
T  29938722 aaagt 29938726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 7632899 - 7632781
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||  ||||||| |||||||||||||| |||||||||||| | ||| ||||||||||||| ||| ||||||  |||||| ||||||  |  ||||    
T  7632899 tattataaacaaaacttaactttttagatacactgaataattaatgtatccggtctataataaagactagatacattgattattgaatgtagttagaaag 7632800  T
Q  236 tgaagttttgcttataata 254  Q
    |||||||||| ||||||||    
T  7632799 tgaagttttgtttataata 7632781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 3989642 - 3989524
Alignment:
Q  133 cactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaa 232  Q
    |||||||||||  ||||||| ||| || ||||||||||||||||| || | || |||||||||||||| ||| | ||||  ||||||  |||||| | ||    
T  3989642 cactattataatcaaaacttaactattaagatacattgaataattgatgtatctagtctataataaagactagaaacattgattattttatgtatttaaa 3989543  T
Q  233 aagtgaagttttgcttata 251  Q
    |||||||||||||||||||    
T  3989542 aagtgaagttttgcttata 3989524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 3989524 - 3989639
Alignment:
Q  139 tataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtga 238  Q
    |||||| |||||||||||||||| ||||||  |||||| ||| | || ||||| || || || ||| |||||| ||||||||||||||||| || ||| |    
T  3989524 tataagcaaaacttcactttttaaatacataaaataatcaatgtttctagtctttattatagactagatacatcaattattcaatgtatcttaatagtta 3989623  T
Q  239 agttttgcttataata 254  Q
    ||||||| ||||||||    
T  3989624 agttttgattataata 3989639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 14623212 - 14623330
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || | || | ||| || || || ||  | | || |||| |||||||||||| |||||    
T  14623212 tattataagcaaaacttcacttttcagatacattgaataattcatgtatctaatctttattatagactgaacagattaatttttcaatgtatctaaaaag 14623311  T
Q  236 tgaagttttgcttataata 254  Q
    |||||||||  ||||||||    
T  14623312 tgaagttttatttataata 14623330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 33123022 - 33123140
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||  |||||||||||||||| |||||||||||||||||| | || ||||| |  || || ||  |||| | ||||||| | ||||||| |||||    
T  33123022 tattataaacaaaacttcactttttaaatacattgaataattaatgtatctagtcttttttatagacttgatacgttaattattaagtgtatctaaaaag 33123121  T
Q  236 tgaagttttgcttataata 254  Q
    | || ||||||||||||||    
T  33123122 taaacttttgcttataata 33123140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 7632776 - 7632901
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 230  Q
    |||||||||||||  ||||||||||||| ||  |||||| |||||| ||| | || ||||| || || || |   |||||| ||||||||| |||||||     
T  7632776 atcactattataaacaaaacttcactttctaactacattcaataatcaatgtatctagtctttattatagaccggatacattaattattcagtgtatcta 7632875  T
Q  231 aaaagtgaagttttgcttataataat 256  Q
    |||||| |||||||| ||||||||||    
T  7632876 aaaagttaagttttgtttataataat 7632901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 29938735 - 29938627
Alignment:
Q  145 taaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagtttt 244  Q
    |||||||  ||||||||||||||||||||||||||| | || ||||| || |  |  ||| |||||| ||||||| ||||||||| ||||||||| ||||    
T  29938735 taaaactctactttttagatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt-aatgtatctaaaaagtgaaatttt 29938637  T
Q  245 gcttataata 254  Q
     |||||||||    
T  29938636 acttataata 29938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 10405046 - 10405106
Alignment:
Q  120 tactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||| |||| ||||||||||||| |||||||||| |||||| ||||||| ||||||||||    
T  10405046 tactctctctgatcactattataaataaaacttcattttttaaatacattaaataattaat 10405106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 14589798 - 14589739
Alignment:
Q  15 caaaggcaaactttagtcaatgaactactggcatcaacatcacatggattattattgcaat 75  Q
    |||||||||||| | |||||||||  ||||||||||||||||||| |||||||||||||||    
T  14589798 caaaggcaaactcttgtcaatgaatcactggcatcaacatcacat-gattattattgcaat 14589739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 26388202 - 26388320
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||  ||||||  |||||||||||| |||||||||||||| | || | ||| || || || ||  |||||| ||||||||||| ||| | |||||    
T  26388202 tattataaacaaaactctactttttagatatattgaataattaatgtatctaatctttattatagactgaatacattaattattcaatatatataaaaag 26388301  T
Q  236 tgaagttttgcttataata 254  Q
    || |||||| |||||||||    
T  26388302 tggagtttttcttataata 26388320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 14589554 - 14589672
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||  |||||||||||||| ||||||||||||||||| || | || ||||| || || || |   | | ||  |||||||||||||||| |||||    
T  14589554 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttattatagaccggacagattgattattcaatgtatctaaaaag 14589653  T
Q  236 tgaagttttgcttataata 254  Q
    | |||||||  ||||||||    
T  14589654 taaagttttatttataata 14589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 23767941 - 23767990
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    |||| |||||||||||||| |||| ||||| |||||||| ||||||||||    
T  23767941 atcaatattataagtaaaatttcagtttttcgatacattaaataattaat 23767990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 30629598 - 30629642
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataat 176  Q
    ||||||||||||  |||| ||||||||||||||| ||||||||||    
T  30629598 tcactattataaacaaaatttcactttttagatagattgaataat 30629642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 22720639 - 22720517
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| | | ||||||||||||||| ||| |||||| ||||||||||||||||| |    
T  22720639 tcactattataagcaaaactccactttttagatacattgaataattaatgtatgcagtctataataaagactagatacattaattattcaatgtatctaa 22720540  T
Q  232 aaagtgaagttttgcttataata 254  Q
    |||||| | ||||| ||||||||    
T  22720539 aaagtggaattttgtttataata 22720517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 52673731 - 52673609
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||  ||||||||||  ||| |||||| ||||||||||| ||||| |    
T  52673731 tcactattataagcaaaatttcactttttagatacattgaataattaatgtatccatactataataaaaactagatacattaattattcaatatatctaa 52673632  T
Q  232 aaagtgaagttttgcttataata 254  Q
    ||||| |||||||||||||||||    
T  52673631 aaagtaaagttttgcttataata 52673609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 22720513 - 22720635
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||  |||| | |||||||||||||||||||||||||||| | || ||||| || || || ||  |||||| ||||||||||||||||| |    
T  22720513 tcactattataaacaaaattccactttttagatacattgaataattaatgtatctagtctttattatagactgcatacattaattattcaatgtatctaa 22720612  T
Q  232 aaagtgaagttttgcttataata 254  Q
    |||||| ||||||||||||||||    
T  22720613 aaagtggagttttgcttataata 22720635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 22768277 - 22768155
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    |||||| |||||  || ||| ||||||||||||||||||||||||||||   | ||||||||||||||| ||| |||||| ||||||||||||||||| |    
T  22768277 tcactactataaacaacactacactttttagatacattgaataattaatgaatgcagtctataataaagactagatacattaattattcaatgtatctaa 22768178  T
Q  232 aaagtgaagttttgcttataata 254  Q
    ||  || ||||||||||||||||    
T  22768177 aatatggagttttgcttataata 22768155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 52673592 - 52673727
Alignment:
Q  119 atactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattat 218  Q
    |||||| ||| | ||||||||||||| ||||||| |||||||||||| |||||||||||||| | || ||| | || || ||  |  |||||| ||||||    
T  52673592 atactccctcccgtcactattataagcaaaactttactttttagatatattgaataattaatgtatctagtttttattatagtatggatacattaattat 52673691  T
Q  219 tcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    ||||||||||| ||||||||| ||||||||||||||    
T  52673692 tcaatgtatctaaaaagtgaaattttgcttataata 52673727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 41622106 - 41622216
Alignment:
Q  134 actattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaa 233  Q
    |||||||||||||||| |  | ||||||||||||||||||||||| | |    |||||||||||||| ||| |||||| ||| ||||||||||||| |||    
T  41622106 actattataagtaaaaatctattttttagatacattgaataattagtgtacgtagtctataataaagactagatacattaatcattcaatgtatctaaaa 41622205  T
Q  234 agtgaagtttt 244  Q
    |||||| ||||    
T  41622206 agtgaactttt 41622216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 22768151 - 22768270
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||||| ||  |||||||||||||||||||||||| | || ||||| || || || ||  || ||| ||||||||||||||||| |    
T  22768151 tcactattataagcaaaactccatattttagatacattgaataattaatgtatctagtctttattatagactgcattcattaattattcaatgtatctaa 22768250  T
Q  232 aaagtgaagttttgcttata 251  Q
    |||||| ||| ||| |||||    
T  22768251 aaagtgtagtgttgtttata 22768270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 49083049 - 49083166
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||| | || ||    ||||||||  ||  ||||| ||||||| ||||||||| |    
T  49083049 tcactattataagcaaaacttca-tttttagatgcattgaataattaatgtatctag----taataaagattagttacattaattatttaatgtatctaa 49083143  T
Q  232 aaagtgaagttttgcttataata 254  Q
    || ||||| ||||||||||||||    
T  49083144 aatgtgaaattttgcttataata 49083166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 2198055 - 2198103
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  2198055 tcactattataagcaaaactccactttttagatacattgaataattaat 2198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 2198111 - 2198059
Alignment:
Q  202 ctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  2198111 ctatatacattaattattcaatgtatctaaaaagtggagttttgcttataata 2198059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 44626293 - 44626173
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    |||||||||||||||||||||||||||| | ||| | |||||||||||| | |   |  ||||||| || ||| |||||| | |||||||||||||||||    
T  44626293 tcactattataagtaaaacttcacttttcaaatatactgaataattaattttt--tggttataatatagactagatacattagttattcaatgtatctga 44626196  T
Q  232 aaagtgaagttttgcttataata 254  Q
    ||| | || ||||| ||||||||    
T  44626195 aaaataaaattttgattataata 44626173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 6464885 - 6464998
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 230  Q
    |||| ||| ||||||||||||| |||||| | |||||||||||||||||| | | ||   ||||||||   ||| |||||| |||||||||| |||| |     
T  6464885 atcattatgataagtaaaactttacttttaaaatacattgaataattaatgtatacatgttataataataactagatacattaattattcaaggtatttt 6464984  T
Q  231 aaaagtgaagtttt 244  Q
    ||||||||||||||    
T  6464985 aaaagtgaagtttt 6464998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 49083170 - 49083053
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||| ||||| ||||||||||||| |||||||||| |  | | ||| || ||    ||| |||||| |||||||||||| |||| |    
T  49083170 tcactattataagcaaaatttcacattttagatacattaaataattaatgtaactaatctttatta----ctagatacattaattattcaatgcatct-a 49083076  T
Q  232 aaagtgaagttttgcttataata 254  Q
    ||| |||||||||||||||||||    
T  49083075 aaaatgaagttttgcttataata 49083053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 22923666 - 22923714
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||    
T  22923666 tcactattataagcaaaactccaatttttagatacattgaataattaat 22923714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 22928319 - 22928367
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||    
T  22928319 tcactattataagcaaaactccaatttttagatacattgaataattaat 22928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 22984598 - 22984646
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||    
T  22984598 tcactattataagcaaaactccaatttttagatacattgaataattaat 22984646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 22998186 - 22998234
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||    
T  22998186 tcactattataagcaaaactccaatttttagatacattgaataattaat 22998234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 41622224 - 41622128
Alignment:
Q  138 ttataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaa 234  Q
    |||||| ||||| ||||||||||||||||||||||| |||||| | || ||||| || || || |||  ||||  ||||||||||||||||| ||||    
T  41622224 ttataaataaaagttcactttttagatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatctaaaaa 41622128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 15794769 - 15794819
Alignment:
Q  131 atcactattataagtaaaacttcact-ttttagatacattgaataattaat 180  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  15794769 atcactattataagtaaaatttcattgttttagatacattgaataattaat 15794819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 2198169 - 2198121
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||||||||    
T  2198169 atcactatta-aagcaaaacttcactttttaaatacattgaataattaat 2198121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 22923718 - 22923670
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| ||||||||||||||||| |||| || ||||||||||||||||    
T  22923718 atacattaattattcaatgtatctaaaaattggagttttgcttataata 22923670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 22928371 - 22928323
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| ||||||||||||||||| |||| || ||||||||||||||||    
T  22928371 atacattaattattcaatgtatctaaaaattggagttttgcttataata 22928323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 22984650 - 22984602
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| ||||||||||||||||| |||| || ||||||||||||||||    
T  22984650 atacattaattattcaatgtatctaaaaattggagttttgcttataata 22984602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 22998238 - 22998190
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| ||||||||||||||||| |||| || ||||||||||||||||    
T  22998238 atacattaattattcaatgtatctaaaaattggagttttgcttataata 22998190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 2198118 - 2198159
Alignment:
Q  207 tacatgaattattcaatgtatctgaaaagtgaagttttgctt 248  Q
    ||||| ||||||||||||||| | ||||||||||||||||||    
T  2198118 tacattaattattcaatgtatttaaaaagtgaagttttgctt 2198159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 5281268 - 5281231
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacatt 169  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  5281268 tcactaatataagtaaaaattcactttttagatacatt 5281231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 39396827 - 39396876
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    |||||||||||||  |||||||||||||||| |||||| | |||||||||    
T  39396827 atcactattataaacaaaacttcactttttaaatacatgggataattaat 39396876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 39897110 - 39897159
Alignment:
Q  126 ctctcatcactattataagtaaaacttcactttttagatacattgaataa 175  Q
    ||||| ||||||||| ||||||||  ||||||||||||| ||||||||||    
T  39897110 ctctcgtcactattagaagtaaaaaatcactttttagattcattgaataa 39897159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 44156133 - 44156092
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaat 173  Q
    |||||| |||||| |||| |||||||||||||||||||||||    
T  44156133 tcactaatataagcaaaaattcactttttagatacattgaat 44156092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 50485840 - 50485791
Alignment:
Q  120 tactcactctcatcactattataagtaaaacttcactttttagatacatt 169  Q
    |||||| |||||||||||||||||   ||| |||||||||||||||||||    
T  50485840 tactcaatctcatcactattataaactaaatttcactttttagatacatt 50485791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 6131436 - 6131484
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaa 179  Q
    |||||||||||||  ||||||| |||||||| ||||||| |||||||||    
T  6131436 atcactattataatcaaaactttactttttaaatacattaaataattaa 6131484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 15794842 - 15794774
Alignment:
Q  187 agtctataataaaggctatatacatgaattattcaatgtatctgaaa-agtgaagttttgcttataata 254  Q
    |||||||||||||| | | |||||| ||||||||||||||||| ||| | |||| |||| |||||||||    
T  15794842 agtctataataaagaccagatacattaattattcaatgtatctaaaacaatgaaattttacttataata 15794774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 22020110 - 22020166
Alignment:
Q  119 atactcactctcatcactattataagtaaaacttcactttttagatacattgaataa 175  Q
    |||||| ||||  ||||||||||||| |||| |||||||||||||| |||| |||||    
T  22020110 atactccctctggtcactattataagcaaaagttcactttttagattcattcaataa 22020166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 26221156 - 26221035
Alignment:
Q  133 cactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaa 232  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||| | | |  |||||||||||  ||| |||||| ||||||||||||||||| ||    
T  26221156 cactaatataagtaaaacttcactttttagatacactgaataattaatatataccatctataataaaaactagatacattaattattcaatgtatctaaa 26221057  T
Q  233 aagtgaagttttgcttataata 254  Q
    |||| |||||||| ||||||||    
T  26221056 aagtaaagttttgtttataata 26221035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 21032539 - 21032662
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||||||| | | ||||||||||||||| ||| |||||| ||||||||||| ||||| |    
T  21032539 tcactattataagcaaaactccactttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatctaa 21032638  T
Q  232 aaagtgaagttttgcttataataa 255  Q
    |||||  | ||||| |||||||||    
T  21032639 aaagtagaattttgtttataataa 21032662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 42364353 - 42364233
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||   | || ||| |||||||||| ||| |||||| ||||||||||||||| | |    
T  42364353 tcactattataagcaaaacttcactttttagatacattgaataattagggtatctagtttataataaagactacatacattaattattcaatgtatttaa 42364254  T
Q  232 aaagtgaagttttgcttataa 252  Q
    ||||| || ||||| ||||||    
T  42364253 aaagtaaatttttgtttataa 42364233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 29486504 - 29486627
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 230  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||| | || ||| ||| |||||| ||| ||| || |||||||||||||||||     
T  29486504 atcactattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaatgtatcta 29486603  T
Q  231 aaaagtgaagttttgcttataata 254  Q
    |||||| |  ||||||||||||||    
T  29486604 aaaagtcagattttgcttataata 29486627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 5240233 - 5240335
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||| || | ||||||||||||||||||||||||| | || ||| ||||||||||  || |||||| ||||||||||||||||| |    
T  5240233 tcactattataagcaaaatttgattttttagatacattgaataattaatgtatctagtatataataaagtttagatacattaattattcaatgtatctaa 5240332  T
Q  232 aaa 234  Q
    |||    
T  5240333 aaa 5240335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 29486632 - 29486509
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 230  Q
    |||||||||||||| ||||  | ||||||||||||||||||||||||||| | |  ||||| ||  | |  ||| |||||| |||||||||||||||||     
T  29486632 atcactattataagcaaaatctgactttttagatacattgaataattaatatatttagtctttatcataaactagatacattaattattcaatgtatcta 29486533  T
Q  231 aaaagtgaagttttgcttataata 254  Q
    ||| ||||| ||||||||||||||    
T  29486532 aaatgtgaaattttgcttataata 29486509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 21032643 - 21032543
Alignment:
Q  154 actttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataat 253  Q
    |||||||||||| |||||||||||||| | || ||||| || || || ||  |||||| ||||||||||||||| | ||||||| |||||||||||||||    
T  21032643 actttttagatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtatataaaaagtggagttttgcttataat 21032544  T
Q  254 a 254  Q
    |    
T  21032543 a 21032543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 7604194 - 7604320
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaa-ttattcaatgtatct 229  Q
    |||||||||||||| |||| ||||||||||||||| | ||||||| ||||   || |||||||||||||| ||| || ||| || ||||||| | |||||    
T  7604194 atcactattataagcaaaatttcactttttagatatactgaataagtaatgcatcaagtctataataaagactaaatccattaatttattcagtatatct 7604293  T
Q  230 gaaaagtgaagttttgcttataataat 256  Q
     |||||| || |||| |||||||||||    
T  7604294 aaaaagtcaaattttacttataataat 7604320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 42364227 - 42364349
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||| ||||||  |||| || |||||||| |||||||||||||||||| | |  ||||| || || |  ||| ||||   ||||||||||||||||| |    
T  42364227 tcactgttataaacaaaaatttactttttaaatacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatctaa 42364326  T
Q  232 aaagtgaagttttgcttataata 254  Q
    |||||||||||||||||||||||    
T  42364327 aaagtgaagttttgcttataata 42364349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 26221035 - 26221150
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||| | || ||| | || || ||    |||| || ||||||||| ||||||| |||||    
T  26221035 tattataaacaaaactttactttttagatacattgaataattaatgtatctagtttttattatagatggtatatattaattattcagtgtatctaaaaag 26221134  T
Q  236 tgaagttttgcttata 251  Q
    ||||||||| ||||||    
T  26221135 tgaagttttacttata 26221150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 892560 - 892606
Alignment:
Q  134 actattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||    
T  892560 actattataagcaaaaattcactttttagattcattgaataattaat 892606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 5240335 - 5240237
Alignment:
Q  156 tttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    ||||||||||||||||||||||||| | || |  || || || |  ||| |||||| ||||||||||||||||| |||| | || ||||||||||||||    
T  5240335 tttttagatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatctaaaaaatcaaattttgcttataata 5240237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 892610 - 892562
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| |||||||||||| |||| ||||||||| ||||||||||||||    
T  892610 atacattaattattcaatgaatctaaaaagtgaatttttgcttataata 892562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 6834041 - 6834085
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    |||||||||||||| || |||||||||||| ||||||||||||||    
T  6834041 tattataagtaaaattttactttttagatatattgaataattaat 6834085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 35969263 - 35969225
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacatt 169  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  35969263 atcactaatataagtaaaaattcactttttagatacatt 35969225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 1098634 - 1098678
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataa 175  Q
    ||||||||||||||||||| || ||||||||||| |||| |||||    
T  1098634 atcactattataagtaaaagttgactttttagattcattcaataa 1098678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 36864556 - 36864512
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataa 175  Q
    ||||||||||||| ||||| |||||||||||||| |||| |||||    
T  36864556 atcactattataaataaaagttcactttttagattcattcaataa 36864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 6197959 - 6197835
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| ||||||| |||||||||||||||| |||||||||| | |  | ||||| |||||| ||| |||||| || |||| ||||||||| |    
T  6197959 tcactattataagcaaaactttactttttagatacattaaataattaatgtatttaatctatgataaagactagatacattaactatttaatgtatctaa 6197860  T
Q  232 aaagtgaagttttgcttataataat 256  Q
    |||||| ||||||||||||||||||    
T  6197859 aaagtggagttttgcttataataat 6197835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 6197837 - 6197955
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||| |||||| ||||||||||||||||| |||| ||||| | || ||||| ||  | ||  || |||||| ||||||| ||||||||| |||||    
T  6197837 tattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatttaatgtatctaaaaag 6197936  T
Q  236 tgaagttttgcttataata 254  Q
    | |||||||||||||||||    
T  6197937 taaagttttgcttataata 6197955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 13325116 - 13325222
Alignment:
Q  146 aaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttg 245  Q
    ||||||||| ||||||||||||||||||||||||| | || ||| |||||||    ||| ||||||  |||||||||| || || ||||||||||||||     
T  13325116 aaaacttcaatttttagatacattgaataattaatgtatctagtttataata----ctaaatacattgattattcaatatacctaaaaagtgaagttttc 13325211  T
Q  246 cttataataat 256  Q
    |||||||||||    
T  13325212 cttataataat 13325222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 27939124 - 27939032
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatg 224  Q
    |||||||||| ||||||| || | ||||||||||||||||||||| ||| |  |||||||||||||||| ||| ||||||  |||||||||||    
T  27939124 tcactattatgagtaaaattttattttttagatacattgaataatgaatgtacccagtctataataaagactagatacattgattattcaatg 27939032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 11322569 - 11322690
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 230  Q
    |||||| ||||||| |||| | |||||||||||| ||||||||||||||| | |||  ||||||||||||  |  ||| || ||||||||||| |||||     
T  11322569 atcactgttataagaaaaagt-cactttttagatgcattgaataattaatgtatccgatctataataaagattggatatattaattattcaatatatcta 11322667  T
Q  231 aaaagtgaagttttgcttataata 254  Q
    |||| || ||||||||||||||||    
T  11322668 aaaattg-agttttgcttataata 11322690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 13325220 - 13325116
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||| ||||||||||||||||| || |||||||||| ||| | |  ||  ||| |||||  ||| |||||| ||||||||||||||||| ||||     
T  13325220 tattataaggaaaacttcactttttaggtatattgaataatcaatgtatttag--tattataaa--ctagatacattaattattcaatgtatctaaaaat 13325125  T
Q  236 tgaagtttt 244  Q
    |||||||||    
T  13325124 tgaagtttt 13325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 11322695 - 11322589
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 230  Q
    |||||||||||||| |||||| || |||||||||| |||||||||||||| | |||| ||| || || ||     |||||| |||||||||||| ||||     
T  11322695 atcactattataagcaaaact-caatttttagatatattgaataattaatatatccaatctttattatagatcggatacattaattattcaatgcatcta 11322597  T
Q  231 aaaagtga 238  Q
    ||||||||    
T  11322596 aaaagtga 11322589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 158486 - 158444
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgctt 248  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||    
T  158486 atacattaattattcaatgtatctaaaaagtgaaattttgctt 158444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 158448 - 158482
Alignment:
Q  146 aaaacttcactttttagatacattgaataattaat 180  Q
    |||| ||||||||||||||||||||||||||||||    
T  158448 aaaatttcactttttagatacattgaataattaat 158482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 1214067 - 1214021
Alignment:
Q  134 actattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    |||||||||| |||||||  |||||||||||| ||||||||||||||    
T  1214067 actattataaataaaactctactttttagatatattgaataattaat 1214021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 28205857 - 28205809
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| |||||||||||||||||||||| | || ||||| ||||||||    
T  28205857 atacattaattattcaatgtatctgaaaaattaaattttgtttataata 28205809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 43140553 - 43140601
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||  ||||| | |||| ||||||||||||||||||||||    
T  43140553 tcactattataaacaaaacattacttattagatacattgaataattaat 43140601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 4132516 - 4132397
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatct-gaaaa 234  Q
    ||||||||  ||||||| ||||||||||||||||||||| ||||| | |  |||||||||||||  |||||||||| |||||||||||||||||  ||||    
T  4132516 tattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaattattcaatgtatctaaaaaa 4132417  T
Q  235 gtgaagttttgcttataata 254  Q
    ||||| ||||||||||||||    
T  4132416 gtgaaattttgcttataata 4132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 38646315 - 38646177
Alignment:
Q  117 atatactcactctcatcactattataagtaaaacttcactttttagatacattgaataatt-aatctgtccagtctataataaaggctatatacatgaat 215  Q
    |||||||| ||||  ||||||||||||| ||||||||||| |||||||| ||||||||||| ||| | | | |||||||| |||   || ||| || |||    
T  38646315 atatactccctctggtcactattataagcaaaacttcactatttagatatattgaataatttaatgtattcggtctataacaaaaattaaatatattaat 38646216  T
Q  216 tattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||||||||||| ||||||  |||||| |||||||||    
T  38646215 tattcaatgtatctaaaaagttgagttttacttataata 38646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 4132397 - 4132518
Alignment:
Q  136 tattataagtaaaacttcacttttt-agatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaa 234  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||| | |  ||| | || || || ||| |||||| || |||||||||||||| ||||    
T  4132397 tattataagcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaatattcaatgtatctaaaaa 4132496  T
Q  235 gtgaagttttgcttataataat 256  Q
    || |||||||| ||||||||||    
T  4132497 gttaagttttgtttataataat 4132518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 26982771 - 26982819
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26982771 tcactattataagcaaaacttcactttttagatacattgaataattaat 26982819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 41115698 - 41115562
Alignment:
Q  117 atatactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaatt 216  Q
    |||||||| ||||  | ||||||||||||||||||| | |||||| |||||||  ||||||||| | || | ||||||||||||  || |||||| ||||    
T  41115698 atatactctctctggtaactattataagtaaaacttaattttttatatacattacataattaatgtatctactctataataaagattagatacattaatt 41115599  T
Q  217 attcaatgtatctgaaaagtgaagttttgcttataat 253  Q
     ||||||||||||  |||||  |||||| ||||||||    
T  41115598 gttcaatgtatctacaaagtacagttttacttataat 41115562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 45578005 - 45578066
Alignment:
Q  119 atactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  45578005 atactctctctagtcactattataagtaaaatttcactttttagatacattgaacaattaat 45578066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 26982823 - 26982775
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  26982823 atacattaattattcaatgtatctaaaaagtgaagttttgcttataata 26982775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 43250472 - 43250424
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  43250472 tcactattataagcaaaactttactttttagatacattgaataattaat 43250424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 43250417 - 43250468
Alignment:
Q  203 tatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  43250417 tatatacattaattattcaatgtatctaaaaagtaaagttttgcttataata 43250468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 38646175 - 38646221
Alignment:
Q  134 actattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||    
T  38646175 actattataagtaaaactcaactttttagatacattgaataattaat 38646221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 43250376 - 43250418
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaata 174  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  43250376 tcactattataagcaaaactttactttttagatacattgaata 43250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 21857076 - 21857124
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||| || |||||||||| ||||||||||||||||    
T  21857076 tcactattataagcaaaagtttactttttagacacattgaataattaat 21857124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 43250418 - 43250380
Alignment:
Q  216 tattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  43250418 tattcaatgtatctaaaaagtaaagttttgcttataata 43250380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 45578072 - 45578022
Alignment:
Q  204 atatacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||||| |||| |||||||||||| ||||||||| |||| |||||||||    
T  45578072 atatacattaattgttcaatgtatctaaaaagtgaaattttacttataata 45578022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 24155691 - 24155642
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    |||||||| ||||  ||||||||| |||||||||||||| ||||||||||    
T  24155691 atcactatcataaacaaaacttcaatttttagatacattaaataattaat 24155642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 38646255 - 38646296
Alignment:
Q  213 aattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    ||||||||||| ||||| || |||||||||||||||||||||    
T  38646255 aattattcaatatatctaaatagtgaagttttgcttataata 38646296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 254
Target Start/End: Original strand, 41115562 - 41115679
Alignment:
Q  137 attataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagt 236  Q
    |||||||||||||||  ||||| ||||||||||||| ||||||| | || | ||| || || ||  || |||||| ||||||  ||||||| | |||| |    
T  41115562 attataagtaaaactgtactttgtagatacattgaacaattaatgtatctaatctttattatagagtagatacattaattatgtaatgtatataaaaaat 41115661  T
Q  237 gaagttttgcttataata 254  Q
     ||||||| |||||||||    
T  41115662 taagttttacttataata 41115679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 21587842 - 21587890
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||||||||||||  |||| |||| ||||||||||    
T  21587842 tcactattataagcaaaacttcactttcaagatgcattaaataattaat 21587890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 21587894 - 21587846
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| ||||||| |||| ||||  |||||||||||||||||||||||    
T  21587894 atacattaattatttaatgcatcttgaaagtgaagttttgcttataata 21587846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 21857128 - 21857080
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| ||||||||||||| ||| |||||| || ||||||||||||||    
T  21857128 atacattaattattcaatgtgtctaaaaagtaaacttttgcttataata 21857080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 21857219 - 21857171
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||| |||| |||||||| | ||||||||||||||    
T  21857219 tcactattataagcaaaaattcattttttagacatattgaataattaat 21857171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 30457864 - 30457820
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataa 175  Q
    ||||||||||||||||||| ||||||||||| || |||| |||||    
T  30457864 atcactattataagtaaaagttcactttttaaattcattcaataa 30457820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 34703509 - 34703569
Alignment:
Q  191 tataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttata 251  Q
    |||||||||| | |||||||| | | ||| ||||||||| ||||||||| |||||||||||    
T  34703509 tataataaagaccatatacatcattaattgaatgtatctaaaaagtgaatttttgcttata 34703569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 40416972 - 40417032
Alignment:
Q  191 tataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttata 251  Q
    |||||||||| | |||||||| | | ||| ||||||||| ||||||||| |||||||||||    
T  40416972 tataataaagaccatatacatcattaattgaatgtatctaaaaagtgaatttttgcttata 40417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 8352264 - 8352146
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||| | |  | |||||||||||   || |||||| ||| ||||||||||||| ||||     
T  8352264 tattataagcaaaacttccctttttagatatattgaataattaatgtatttattctataataaatattagatacattaatcattcaatgtatctaaaaaa 8352165  T
Q  236 tgaagttttgcttataata 254  Q
    |||||||||||||||||||    
T  8352164 tgaagttttgcttataata 8352146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 256
Target Start/End: Original strand, 8352129 - 8352266
Alignment:
Q  119 atactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattat 218  Q
    |||||| ||||  ||||||||||||| ||||||||| |||||||||||||||||| |||||| | || | | | || || ||  || |||||| ||||||    
T  8352129 atactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattat 8352228  T
Q  219 tcaatgtatctgaaaagtgaagttttgcttataataat 256  Q
    ||||| ||||| ||||| ||||||||||||||||||||    
T  8352229 tcaatatatctaaaaagggaagttttgcttataataat 8352266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 26468419 - 26468305
Alignment:
Q  140 ataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaa 239  Q
    |||||||||| ||||||||||  ||||||||||||||| || | |   ||||||||||||   || |||||| ||||||||||||||| | |||||||||    
T  26468419 ataagtaaaatttcactttttttatacattgaataattgatatatatggtctataataaaaattagatacattaattattcaatgtatttaaaaagtgaa 26468320  T
Q  240 gttttgcttataata 254  Q
     ||||| ||||||||    
T  26468319 attttgtttataata 26468305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 31635871 - 31635757
Alignment:
Q  139 tataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtga 238  Q
    |||||| |||| ||||||||||||||||||||||||| |||| | || ||||||||||||   |   ||||||  |||||||||||||| | ||||||||    
T  31635871 tataagcaaaatttcactttttagatacattgaataactaatatatctagtctataataagcaccgaatacatttattattcaatgtatataaaaagtga 31635772  T
Q  239 agttttgcttataat 253  Q
    |||||| ||| ||||    
T  31635771 agttttacttgtaat 31635757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 14773765 - 14773852
Alignment:
Q  167 attgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||||||||| | | |||||||||||||| || ||| |||||| |||||| |||| ||||| |||||| || ||||||||||||||    
T  14773765 attgaataattattgtatccagtctataatacagactagatacattaattatacaatatatctaaaaagttaaattttgcttataata 14773852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 31635752 - 31635871
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    |||| |||| |||||||||||||||||||| |||||||||||||| ||| | | | ||   || || || ||| ||| || | ||||||||||||||| |    
T  31635752 tcaccattacaagtaaaacttcactttttatatacattgaataataaatgtattcggtgcttattatagactagatatattagttattcaatgtatctaa 31635851  T
Q  232 aaagtgaagttttgcttata 251  Q
    |||||||| |||||||||||    
T  31635852 aaagtgaaattttgcttata 31635871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 43731248 - 43731130
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||| |||| |||| ||||||||||||||||||| ||||| | || | | | |||||||  ||| |||||| ||||||| ||||||||| | | |    
T  43731248 tattataagcaaaatttcattttttagatacattgaatagttaatgtatctattttttaataaaaactagatacattaattattgaatgtatcttacatg 43731149  T
Q  236 tgaagttttgcttataata 254  Q
    | || ||||||||||||||    
T  43731148 taaatttttgcttataata 43731130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 26468301 - 26468419
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||  |||| ||||||||||| |||||||||||||||||| | || | | | || || || | ||||| || |||||||||||||||   |    
T  26468301 tcactattataaacaaaatttcactttttaaatacattgaataattaatgtatctaatttttattatagaccatatatatcaattattcaatgtataaaa 26468400  T
Q  232 aaagtgaagttttgcttat 250  Q
    |||||||| |||| |||||    
T  26468401 aaagtgaaattttacttat 26468419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 43731128 - 43731250
Alignment:
Q  134 actattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaa 233  Q
    ||||||||||| |||| || || | | ||||||||| |||||||||| | || ||| | || ||||   || |||||| || |||||||||||||| |||    
T  43731128 actattataagcaaaaatttacatgtaagatacattcaataattaatgtatctagtttttattaaaaaatagatacattaactattcaatgtatctaaaa 43731227  T
Q  234 agtgaagttttgcttataataat 256  Q
    | |||| ||||||||||||||||    
T  43731228 aatgaaattttgcttataataat 43731250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 30800186 - 30800254
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaag 200  Q
    ||||| ||||||  |||| || ||||| |||||||||||||| |||||| | |||||||||||||||||    
T  30800186 tcactcttataaacaaaattttactttctagatacattgaatgattaatgtatccagtctataataaag 30800254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 897120 - 897042
Alignment:
Q  156 tttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaa 234  Q
    ||||||||||||||||||||||||| | |||  | || ||| ||| ||| |||||| ||||||| ||||||||| ||||    
T  897120 tttttagatacattgaataattaatgtatcccatttacaatgaagactaaatacattaattattaaatgtatctaaaaa 897042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 39940620 - 39940571
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||||||||| || ||||||||||| |||| ||||| ||||    
T  39940620 atcactattataagtaaaaatttactttttagattcattcaataaataat 39940571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 10256787 - 10256831
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataa 175  Q
    |||||||||||||| |||| |||||||||||||| |||| |||||    
T  10256787 atcactattataagaaaaaattcactttttagattcattcaataa 10256831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 50335053 - 50334932
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| |||| || | |||||||||| |||||||||||||| | | ||  |||||||||||  || |||||| ||||||||||||||||| |    
T  50335053 tcactattataagcaaaattt-attttttagatatattgaataattaatgtatacaacctataataaagattagatacattaattattcaatgtatctaa 50334955  T
Q  232 aaagtgaagttttgcttataata 254  Q
    || ||||||||||| ||||||||    
T  50334954 aatgtgaagttttgtttataata 50334932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 35239682 - 35239782
Alignment:
Q  154 actttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataat 253  Q
    ||||||||||||||||||||||||||| | |  |||||||||||||| ||| |||||| || |||||||||||||| ||| || || ||||| |||||||    
T  35239682 actttttagatacattgaataattaatgtattaagtctataataaagactagatacattaactattcaatgtatctaaaatgtcaaattttggttataat 35239781  T
Q  254 a 254  Q
    |    
T  35239782 a 35239782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 29497369 - 29497471
Alignment:
Q  134 actattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaa 233  Q
    ||||||||||| |||| || |||||||||||||||||| |||||||| | | ||||||| ||||||| ||| ||| || |||| |||||||||||| |||    
T  29497369 actattataagcaaaattttactttttagatacattgactaattaatgtattcagtctacaataaagactagatatattaattgttcaatgtatctaaaa 29497468  T
Q  234 agt 236  Q
    |||    
T  29497469 agt 29497471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 50334932 - 50335049
Alignment:
Q  136 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 235  Q
    ||||||||  |||||||||| |||||||||||||||||||||||| | || | ||| || || ||| | ||||||| ||||||||||| ||||| ||||     
T  50334932 tattataaacaaaacttcacattttagatacattgaataattaatgtatctaatctttattataggttgtatacattaattattcaatatatctaaaaaa 50335031  T
Q  236 tgaagttttgcttataata 254  Q
    | || ||||||||||||||    
T  50335032 t-aaattttgcttataata 50335049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 32711319 - 32711221
Alignment:
Q  152 tcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttat 250  Q
    ||||||||||||| |||||||||||| || | ||  |||||||||| |||| | |||||| |||||||||||| | || ||||||||  ||||||||||    
T  32711319 tcactttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacctaaaaagtgactttttgcttat 32711221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 29497471 - 29497371
Alignment:
Q  154 actttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataat 253  Q
    ||||||||||||||||||| ||||||| | || ||||| || |  || ||  |||||| ||||| ||||||||||| |||||| || |||||||||||||    
T  29497471 actttttagatacattgaacaattaatatatctagtctttattgtagactgaatacattaattagtcaatgtatctaaaaagtaaaattttgcttataat 29497372  T
Q  254 a 254  Q
    |    
T  29497371 a 29497371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 35239786 - 35239682
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||  |||| || || |||||||||||||||||| ||||| | || ||||| || || || ||  |||||| ||||||||||||||||| |    
T  35239786 tcactattataaccaaaatttgacattttagatacattgaatagttaatgtatctagtctttattatagacttaatacattaattattcaatgtatctaa 35239687  T
Q  232 aaagt 236  Q
    |||||    
T  35239686 aaagt 35239682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 42912351 - 42912385
Alignment:
Q  135 ctattataagtaaaacttcactttttagatacatt 169  Q
    |||||||||| ||||||||||||||||||||||||    
T  42912351 ctattataagcaaaacttcactttttagatacatt 42912385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 42912385 - 42912352
Alignment:
Q  221 aatgtatctgaaaagtgaagttttgcttataata 254  Q
    ||||||||| ||||||||||||||||||||||||    
T  42912385 aatgtatctaaaaagtgaagttttgcttataata 42912352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 53711867 - 53711916
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    |||| |||||||||||||| ||||||||||| |||| || ||||||||||    
T  53711867 atcattattataagtaaaatttcactttttaaatactttaaataattaat 53711916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 53711998 - 53711870
Alignment:
Q  127 tctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgta 226  Q
    |||| ||||||| |||||||||| || | |||||| ||| |||||||||||||  | || ||||||||  ||||   | |||||| ||||||| || |||    
T  53711998 tctcgtcactatcataagtaaaatttaa-tttttatatatattgaataattaacgtatctagtctatatgaaagatcaaatacattaattatttaaagta 53711900  T
Q  227 tctgaaaagtgaagttttgcttataataat 256  Q
    | | ||||||||| |||| |||||||||||    
T  53711899 tttaaaaagtgaaattttacttataataat 53711870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 48593175 - 48593255
Alignment:
Q  154 actttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaa 234  Q
    |||||||||||||||||||||||| || | ||  ||||| |||| || | | |||||| |||||||||||| |||| ||||    
T  48593175 actttttagatacattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaa 48593255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 8996792 - 8996882
Alignment:
Q  164 tacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||||  ||||||||||||||||  |||||  ||||||||||||||||    
T  8996792 tacattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaagtagagttttgcttataata 8996882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 8717643 - 8717540
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 230  Q
    ||||||||||||||| ||| || | |||||| ||||||||||||| |||| | || ||| |||||||||| ||| |||||| ||||||| |||||||||     
T  8717643 atcactattataagttaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatcta 8717544  T
Q  231 aaaa 234  Q
    ||||    
T  8717543 aaaa 8717540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 10495777 - 10495729
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  10495777 tcactattataagcaaaatttcactttttagatacattgaatatttaat 10495729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 43100756 - 43100804
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaat 180  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  43100756 tcactattataagcaaaaattcattttttagatacattgaataattaat 43100804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 8996729 - 8996791
Alignment:
Q  131 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctat 193  Q
    |||||||||||||| |||| |||  ||||||||||||||||||||||||| | || |||||||    
T  8996729 atcactattataagcaaaatttcggtttttagatacattgaataattaatgtatctagtctat 8996791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 8996886 - 8996792
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgta 226  Q
    ||||||||||||| ||||||  ||||| ||||||||||||||||| ||| | |  ||||| || || || ||| |||||| ||||||||||||||    
T  8996886 tcactattataagcaaaactctactttctagatacattgaataatcaatgtatatagtctttattatagactagatacattaattattcaatgta 8996792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 20218679 - 20218557
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 231  Q
    ||||||||||||| || |  ||||||||||||| |||||||||||| || | ||||||||||||||  | ||  ||||||   |||||||||| | || |    
T  20218679 tcactattataagcaagaaatcactttttagattcattgaataattgatgtatccagtctataatactgactgcatacatcggttattcaatgaaactaa 20218580  T
Q  232 aaagtgaagttttgcttataata 254  Q
    ||||||   ||||||||||||||    
T  20218579 aaagtgtttttttgcttataata 20218557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 13953899 - 13953774
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatct-g 230  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||| ||| | || | | |||||||||| ||||||| |  ||||||| ||| |||||      
T  13953899 tcactattataaacaaaacttcacattttagatacattagataatcaatatatctaatttataataaagactatatagactaattatttaatatatctaa 13953800  T
Q  231 aaaagtgaagttttgcttataataat 256  Q
    |||| | || ||||||||||||||||    
T  13953799 aaaaataaaattttgcttataataat 13953774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 14095106 - 14094981
Alignment:
Q  132 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatct-g 230  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||| ||| | || | | |||||||||| ||||||| |  ||||||| ||| |||||      
T  14095106 tcactattataaacaaaacttcacattttagatacattagataatcaatatatctaatttataataaagactatatagactaattatttaatatatctaa 14095007  T
Q  231 aaaagtgaagttttgcttataataat 256  Q
    |||| | || ||||||||||||||||    
T  14095006 aaaaataaaattttgcttataataat 14094981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 10495725 - 10495773
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| || |||||||||||||| ||||||||| ||||||||||||||    
T  10495725 atacattaaatattcaatgtatctaaaaagtgaaattttgcttataata 10495773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 39792211 - 39792136
Alignment:
Q  149 acttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatg 224  Q
    |||||| |||||||||||| |||||||||||| | || | |||||||||||  ||| |||||| ||||||| ||||    
T  39792211 acttcattttttagatacaatgaataattaatgtatctaatctataataaaaactagatacattaattatttaatg 39792136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 43100801 - 43100760
Alignment:
Q  213 aattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    ||||||||||||||||| |||| |||| ||||||||||||||    
T  43100801 aattattcaatgtatctaaaaaatgaatttttgcttataata 43100760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 8996782 - 8996734
Alignment:
Q  206 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 254  Q
    |||||| ||||||||||||||||| ||||  ||| ||||||||||||||    
T  8996782 atacattaattattcaatgtatctaaaaaccgaaattttgcttataata 8996734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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