View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_19 (Length: 256)
Name: NF15112_low_19
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_19 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 448661 - 448456
Alignment:
| Q |
1 |
agtgtaacccccttttaccttaatcgacacatgtattcaatcaatggaaaatataagggttgcaatacattcatgacttgttcatgaattttgttttcta |
100 |
Q |
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| T |
448661 |
agtgtaacccccttttaccttaatcgacacatgtattcaatcaatggaaaatataagggttgcaatacattcatgacttgttcatgaattttgttttcta |
448562 |
T |
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| Q |
101 |
tacatatgtttgaataacatatcaatattccttttnnnnnnnnnnnnnnnnncctttgattatatgtataagctatatataacataaagttataagtttt |
200 |
Q |
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| T |
448561 |
tacatatgtttgaataacatatcaatattcctt--------aaaaaaaaaaacctttgattatatgtataagctatatataacataaagttataagtttt |
448470 |
T |
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| Q |
201 |
gtttaaataaataa |
214 |
Q |
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|||||||||||||| |
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| T |
448469 |
gtttaaataaataa |
448456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 447874 - 447834
Alignment:
| Q |
216 |
catgttcgtggtaactgttctaaggtgcggcactccattat |
256 |
Q |
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| T |
447874 |
catgttggtggtaactgttctaaggtgcggcactccattat |
447834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 25144 - 25104
Alignment:
| Q |
216 |
catgttcgtggtaactgttctaaggtgcggcactccattat |
256 |
Q |
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| T |
25144 |
catgtttgtggtaactgttctaaggtgcggcactccattat |
25104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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