View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_2 (Length: 600)
Name: NF15112_low_2
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 19469720 - 19470125
Alignment:
| Q |
10 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatga |
109 |
Q |
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| T |
19469720 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatga |
19469819 |
T |
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| Q |
110 |
ttttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatc |
209 |
Q |
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| T |
19469820 |
ttttggtcaaggactgctgttttcgcacagtggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctggaacttatc |
19469919 |
T |
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| Q |
210 |
tagggaatattattagatgttttcacgttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
309 |
Q |
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| T |
19469920 |
tagagaatattattagatgttttcaggttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
19470019 |
T |
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| Q |
310 |
gctcatttggctcttcaggttcctgataggatttggtgggaggaagtacttgaatccattaatttgtattgtgactattcctttatttaatctgtagttt |
409 |
Q |
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| T |
19470020 |
gctcatttggctcttcaggttcctgataggatttggttagaggaagtacttgaatccattaatttgtattgtgacaattcctttatttaatctgtagttt |
19470119 |
T |
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| Q |
410 |
ttgttt |
415 |
Q |
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|||||| |
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| T |
19470120 |
ttgttt |
19470125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 498 - 587
Target Start/End: Original strand, 19470210 - 19470299
Alignment:
| Q |
498 |
aattcatatgctatgtgatgctgattttaatttagatgtgtcaattccagttaataatcttcaacttatatatcacaaagtcgaagatga |
587 |
Q |
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| T |
19470210 |
aattcatatgctatgtgatgctgattttaatttagatgtgtcaattccagttaataatcttcaacttatatatcacaaattcgaagatga |
19470299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 47865596 - 47865355
Alignment:
| Q |
12 |
agatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgatt |
111 |
Q |
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| T |
47865596 |
agatgaagatggacatgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgatt |
47865497 |
T |
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| Q |
112 |
ttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatcta |
211 |
Q |
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| T |
47865496 |
ttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatcta |
47865397 |
T |
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| Q |
212 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
253 |
Q |
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| T |
47865396 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
47865355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 245 - 416
Target Start/End: Complemental strand, 47864488 - 47864317
Alignment:
| Q |
245 |
aacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
344 |
Q |
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| T |
47864488 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
47864389 |
T |
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| Q |
345 |
gtgggaggaagtacttgaatccattaatttgtattgtgactattcctttatttaatctgtagtttttgtttc |
416 |
Q |
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| T |
47864388 |
gttggaggaagtgcttgaatccattaatttgtattgtgacaattcctttatttaatctgtagtttttgtttc |
47864317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 498 - 587
Target Start/End: Complemental strand, 47864241 - 47864153
Alignment:
| Q |
498 |
aattcatatgctatgtgatgctgattttaatttagatgtgtcaattccagttaataatcttcaacttatatatcacaaagtcgaagatga |
587 |
Q |
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| T |
47864241 |
aattcatatgctatgtgatgcttattttaattcagatgt-tcaattccagttaataatcttcaacttatatatcacaaagtcgaagatga |
47864153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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