View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_4 (Length: 457)
Name: NF15112_low_4
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 436
Target Start/End: Original strand, 1025389 - 1025826
Alignment:
| Q |
4 |
tgatctcaacatttacaacaaccatatccatgttatgctgaatatcttactnnnnnnnnnngttatgctgaatatcaaccagaaaaatagtgttgctgtt |
103 |
Q |
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|||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1025389 |
tgatgtcaacatttacaacaaccatatccaagttattctgaatatcttactaaaaaaaaa-gttatgctgaatatcaaccagaaaaatagtgttgctgtt |
1025487 |
T |
|
| Q |
104 |
ttattatgattttttgtcctcgaaatcataacataaagtatcgcaaaaacaatcagaattaaaaattcacctacatggtatcgtatggtatcataaagaa |
203 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1025488 |
ttattatgattttttgtcctcgaaatcataatataaagtatcgcaaaaataatcagaattaaaaattcacctacatggtatcgtatggtatcataaagaa |
1025587 |
T |
|
| Q |
204 |
atgaataaaacttgattgcttttaannnnnnnactattcaactttgcactgtgtttgtgggttgcgtaggcaatgttaatatttttaacagtaaccgtct |
303 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1025588 |
atgaataaaacttgattgcttttaatttttttactattcaactttgcactgtgtttgtgggttgcgtaggcaatgttaatatttttagcagtaaccgtct |
1025687 |
T |
|
| Q |
304 |
aatctacattaatggtatcnnnnnnnttaaattaattttctgaacttatagtcttaagttcctaaatt-ataattgagattatgtatta-----tatata |
397 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
1025688 |
aatctacattaatggtatcaaaaaaattaaattaattttgtgaacttatagtcttaagttcctaaattaataattgagattatgtattatactttatata |
1025787 |
T |
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| Q |
398 |
attgcatcaataacatcatggaattttagacgtgagtcc |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1025788 |
attgcatcaataacatcatggaattttagacgtgagtcc |
1025826 |
T |
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